Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq116 114 8e-21 >seq116 Length=4125705 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||||||| || | ||| || |||||||| || |||||| Sbjct 2790781 CCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAA 2790722 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || || | |||||| || || || ||||| | ||| ||||| ||||| Sbjct 2790721 AGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGG 2790662 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | || ||||| || ||| ||| | ||||||| | || ||||| ||| |||| Sbjct 2790661 ATCCCTTCCTTATCC-TGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCT-TCCA 2790604 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||||||||| || || || | ||||| |||||||||||||| Sbjct 2790603 CCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 104 bits (114), Expect = 1e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| || | || ||||| || ||| |||||| || ||||| ||||| || Sbjct 2791010 GCCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 2790951 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||| || | || || |||||||| || || || || | |||||||||||||| || Sbjct 2790950 TAATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGG 2790891 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCC 34656 | ||| ||||| ||| ||| ||| || ||| | || |||| | ||| ||| Sbjct 2790890 AATTCCTTCCTTATCT-TGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGC-CTCG 2790833 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || || ||||| ||||| | || ||||| || |||||||| Sbjct 2790832 ACTTCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| |||| || ||||| ||||| ||||||||||| |||||||| || Sbjct 2790326 GCCTCCACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGA 2790267 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| | ||| || || || || || || | ||| ||||| || || Sbjct 2790266 CAGCGTGCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGG 2790207 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCC 34656 | ||| |||||||| |||| || | ||||||| | ||| || || ||| || Sbjct 2790206 GATTCCTTCCTTGTCCTGGATC-TTAGCTTTAACGTTCTCAATGGTATCGGATGCT-TCG 2790149 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||| || || || ||||| || | || || ||||| |||||||| Sbjct 2790148 ACCTCCAAAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCAT 2790099 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| || || || |||||| || ||||| ||||| || | || || Sbjct 2789421 AGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGT 2789362 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || ||||| || || || | ||| || || || || | ||||||| Sbjct 2789361 CCGTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCC 2789302 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 || ||| ||||| |||| | ||| ||||| ||| || || | ||| Sbjct 2789301 TTATCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTA 2789242 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || || || || || ||||||||||||||||| Sbjct 2789241 ATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCATGTT 2789201 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| || || || ||||||||| |||||||| || || | || || Sbjct 2789860 AGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGATAAAGTACGG 2789801 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | | ||| ||||| || || | ||| ||| Sbjct 2789800 CCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCC 2789741 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| |||||| |||| || ||||| ||| ||||||| ||| Sbjct 2789740 TTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACTTCCAGGGTG 2789681 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || |||||||||||||| Sbjct 2789680 ATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726009722088