Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq116 140 3e-28 seq25 86.0 5e-12 >seq116 Length=4125705 Score = 140 bits (154), Expect = 3e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| || ||| | ||||| || || || || | || Sbjct 2789203 CATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGGCTTC 2789262 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | || || || |||||||| || || || || ||||||||||| Sbjct 2789263 CGACACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCGATCA 2789322 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||||||||| ||| |||| ||| | || | ||||||||||| Sbjct 2789323 GCAGAGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTACAA 2789382 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| || |||||||||||| | || |||| ||||| |||| Sbjct 2789383 CATCCAGAAGGAGTCGACCCTTCACCTGGTCCTGCGTCTGCG 2789424 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| || || ||||| | || || | |||||||| |||| Sbjct 2790326 CATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTC 2790385 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| ||||||| | |||||| || ||||| || ||||||||||| || || ||||| Sbjct 2790386 CGACACGATTGAAAACGTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCA 2790445 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | ||||| | || ||||| ||| | ||||| | ||| | ||||| ||||| Sbjct 2790446 GCAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAA 2790505 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | ||| | || | || | || ||||| || Sbjct 2790506 TATTCAGAAGGAGTCCACTCTGCATCTCGTCCTTCGACTTCGTGGTGGGAT 2790556 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| || | || ||||| ||||| || |||| Sbjct 2790783 ATGCAGATCTTCGTGAAGACCCTCACCGGGAAAACCATCACTCTGGAAGTCGAGGCGTCG 2790842 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || ||||||||||| || ||||| || || || || ||| Sbjct 2790843 GACACGATCGAGAACGTAAAGGTCAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAA 2790902 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || |||||| | || || | || | |||||||||||| Sbjct 2790903 CAGCGACTCATCTTCGCTGGGAAACAACTCGAGGATGGACGCACATTATCCGATTACAAC 2790962 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || |||||||| ||| ||||||| || | || | ||||| |||| Sbjct 2790963 ATCCAGAAGGAGTCCACCCTACATTTAGTACTTCGCCTTCGGGGAGGCA 2791011 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || |||||| | || || || ||||| || | ||| Sbjct 2789643 ATGCAGATTTTTGTTAAGACTCTCACTGGCAAGACCATCACCCTGGAAGTCGAGGCTTCC 2789702 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || || || || |||||||| ||||| || ||||| || || Sbjct 2789703 GACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAG 2789762 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || | || || | || | ||||| || ||| Sbjct 2789763 CAGAGACTCATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGTACTTTATCCGACTATAAC 2789822 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||||||| | || |||| ||||| |||| ||||| || Sbjct 2789823 ATCCAAAAGGAGTCGACCCTTCACCTGGTCCTGCGTCTGCGTGGTGGAAT 2789872 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || ||| | || ||| | || || ||| | ||| Sbjct 2790099 ATGCAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATCC 2790158 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || || ||||| ||||| || |||||||| || Sbjct 2790159 GATACCATTGAGAACGTTAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAG 2790218 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| ||||| ||||| ||||| || || | || ||||| || Sbjct 2790219 CAGAGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTGATTATAAT 2790278 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | ||||| || |||| | || || ||||| Sbjct 2790279 ATTCAAAAGGAATCTACTCTGCATTTAGTCCTGCGACTTCGTGGAGGCAT 2790328 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | ||||| | || ||||| | ||| Sbjct 2789871 ATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACCATTACATTGGAGGTGGAGGCATCC 2789930 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||| ||||||||||| || || || |||||| Sbjct 2789931 GACACAATTGAAAACGTTAAGGCCAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCAA 2789990 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||||||| || || ||||| || || | || ||||||||| Sbjct 2789991 CAAAGGTTGATCTTCGCCGGCAAGCAGTTAGAAGATGGTCGCACATTATCTGATTACAAC 2790050 Query 27168 ATTCAAAAGGAGTCGAC 27184 |||||||| ||||| || Sbjct 2790051 ATTCAAAAAGAGTCAAC 2790067 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || |||||| | || || | || |||||| | || Sbjct 2790555 ATGCAGATTTTTGTCAAAACCCTTACGGGCAAGACGATAACCTTGGAGGTGGAAGCATCG 2790614 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| |||||||| || || ||||| || || || || || Sbjct 2790615 GACACCATCGAAAACGTTAAAGCCAAAATTCAGGATAAGGAAGGGATCCCGCCAGACCAG 2790674 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 ||| | ||||| | ||| || ||||||||||| || | |||| || |||| || ||||| Sbjct 2790675 CAGAGGTTAATCTTCGCTGGAAAACAATTGGAGGA-TGGTCGAACGCTTTCAGACTACAA 2790733 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 |||||| || ||||| | | ||||||||| Sbjct 2790734 CATTCAGAAAGAGTCAATGCTTCATTTGGTT 2790764 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || ||||||||| | || || || ||||| || | ||||| | || ||| Sbjct 2789427 GTTAAGACCCTTACCGGCAAGACCATCACCCTGGAAGTCGAGGCTTCCGATACCATCGAG 2789486 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | || || ||| ||||| ||||| || || || ||||| ||||| ||| | | || Sbjct 2789487 AACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCAGATCAGCAGAGACTCATC 2789546 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | |||||||| || | || || | || | ||||| |||||||| || |||||| Sbjct 2789547 TTTGCCGGCAAGCAGCTAGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAG 2789606 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| | || |||| ||||| |||| ||||| || Sbjct 2789607 TCGACCCTTCACCTGGTCCTGCGTCTGCGCGGTGGAAT 2789644 >seq25 Length=4911174 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 |||| ||||||||||| ||||| || | || |||||||| |||||||| | || || | Sbjct 4899143 TAGGCTGTATGTGGTCAATTTGTGGAATTCATGATCAAGGGTGGAAGGAAAGAAATGTAT 4899084 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGT----AAAT 135763 |||| || || | |||||||| ||| | || ||| | |||| ||||| || |||| Sbjct 4899083 TTGGAAAAATAAGGTATATGAATTATAAAGGCTGTCAACGAAAGTTTAACGTAGCAAAAT 4899024 Query 135764 TTGTA 135768 ||||| Sbjct 4899023 TTGTA 4899019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913311454720