Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq116 138 8e-28 >seq116 Length=4125705 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || ||||| |||||||| ||||| || | || Sbjct 2790783 ATGCAGATCTTCGTGAAGACCCTCACCGGGAAAACCATCACTCTGGAAGTCGAGGCGTCG 2790842 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| |||||| || || ||||| | || || || ||| Sbjct 2790843 GACACGATCGAGAACGTAAAGGTCAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAA 2790902 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || |||||||| || || | |||||| ||| |||||||||| Sbjct 2790903 CAGCGACTCATCTTCGCTGGGAAACAACTCGAGGATGGACGCACATTATCCGATTACAAC 2790962 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || |||||||| |||||||||| Sbjct 2790963 ATCCAGAAGGAGTCCACCCTACATTTAGT 2790991 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || ||||| ||||| || || || || || || | || || || | | Sbjct 2789870 AATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACCATTACATTGGAGGTGGAGGCATC 2789929 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || || ||| ||||||||||| | || |||||||| Sbjct 2789930 CGACACAATTGAAAACGTTAAGGCCAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCA 2789989 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || |||||||| || | ||||| | ||||| ||| |||||||| Sbjct 2789990 ACAAAGGTTGATCTTCGCCGGCAAGCAGTTAGAAGATGGTCGCACATTATCTGATTACAA 2790049 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||||||||| || | || ||||| | ||| | ||||| ||| Sbjct 2790050 CATTCAAAAAGAGTCAACGCTTCACTTAGTCCTCAGGCTTCGAGGTGGA 2790098 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||||||||| ||||| || ||||| ||||| | ||||| || | | Sbjct 2790327 ATGCAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCC 2790386 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || ||| || |||||||| | || || ||||| Sbjct 2790387 GACACGATTGAAAACGTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCAG 2790446 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | ||||| ||||| ||||| ||||| ||||| | || || | ||| ||||| Sbjct 2790447 CAGAGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAAT 2790506 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 2790507 ATTCAGAAGGAGTCCAC 2790523 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || || | || || || || || || ||||| || || | Sbjct 2789201 AACATGCAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGGCT 2789260 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| |||| || ||| || || || || | || || ||| Sbjct 2789261 TCCGACACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCGAT 2789320 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | || || || |||||||| |||||||| |||| ||| ||||| ||||||| Sbjct 2789321 CAGCAGAGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTAC 2789380 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 2789381 AACATCCAGAAGGAGTCGAC 2789400 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||||| ||||| || ||||| || | || || || | || Sbjct 2790555 ATGCAGATTTTTGTCAAAACCCTTACGGGCAAGACGATAACCTTGGAGGTGGAAGCATCG 2790614 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| |||||| || || ||||| | |||||||| || Sbjct 2790615 GACACCATCGAAAACGTTAAAGCCAAAATTCAGGATAAGGAAGGGATCCCGCCAGACCAG 2790674 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGA----CGAACGCACTTTAGGCGATTA 23786 ||| | ||||| || || || |||||| |||| || |||||| |||| || || Sbjct 2790675 CAGAGGTTAATCTTCGCTGGAAAACAATTGGAGGATGGTCGAACG--CTTT--CAGACTA 2790730 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || |||||||| | | ||||| ||| Sbjct 2790731 CAACATTCAGAAAGAGTCAATGCTTCATTTGGTT 2790764 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| ||||| || ||||| || || || ||||| || ||||| || | | Sbjct 2789642 AATGCAGATTTTTGTTAAGACTCTCACTGGCAAGACCATCACCCTGGAAGTCGAGGCTTC 2789701 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | |||| || || ||||| ||||| | || ||||| || Sbjct 2789702 CGACACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 2789761 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||||||||| || || || || | || |||||| ||| || || Sbjct 2789762 GCAGAGACTCATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGTACTTTATCCGACTATAA 2789821 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 2789822 CATCCAAAAGGAGTCGAC 2789839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005744155488