Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq116 141 2e-28 seq20 100 7e-16 >seq116 Length=4125705 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| ||||| || || || || ||||||| || || |||| ||||| Sbjct 2789864 ACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGATAAAGT 2789805 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| ||||||||||| || || ||||| |||| || ||||| || || || || Sbjct 2789804 ACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCC 2789745 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| ||| ||| ||||| ||||| || | || || || | Sbjct 2789744 TTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACTTCCAG 2789685 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| |||||||| || | ||| || | || | |||||| Sbjct 2789684 GGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCATT 2789642 Score = 140 bits (154), Expect = 8e-28 Identities = 167/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| |||||| | || ||||| ||||| ||||| | ||| ||||| | || || Sbjct 2790320 ACGAAGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGACAGCGT 2790261 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||||| ||||| ||||||||||| | || || |||||||| || || || Sbjct 2790260 GCGACCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGGATTCC 2790201 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||| |||||| || |||| | | | || ||||| || || | ||| || || | Sbjct 2790200 TTCCTTGTCCTGGATC-TTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGACCTCCA 2790142 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | ||||| ||||| || || | ||| || | || | |||||| Sbjct 2790141 AAGTGATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| || || || || || |||| ||||| |||| || ||| Sbjct 2789635 CGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG 2789576 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| ||||||||||| || || ||||| |||| || || || || ||||| || Sbjct 2789575 CGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCC 2789516 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || |||||| |||||| |||||||| || || | || || || | Sbjct 2789515 TCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGACTTCCAGG 2789456 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 2789455 GTGATGGTCTTGCCGGT 2789439 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | || || ||||| || || |||| |||||||||| || || Sbjct 2791003 CGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGATAATGTG 2790944 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || || |||||||||||||| ||||| |||||||| || ||||| ||| Sbjct 2790943 CGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCT 2790884 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| || || ||| || ||||| ||||| || | || || || | Sbjct 2790883 TCCTTATCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGA 2790824 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | || || | ||| | ||||| Sbjct 2790823 GTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 107 bits (118), Expect = 5e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || | || || | || ||||| || | ||||| || | | || Sbjct 2790776 ACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAAAGCGT 2790717 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || | || || ||||||||||| | | || ||||| ||||| || || Sbjct 2790716 TCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGGATCCC 2790657 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTT-CGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||| || || || ||| |||| | | || |||||||||| || | |||||| || | Sbjct 2790656 TTCCTTATCCTGAAT-TTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCACCTCCA 2790598 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 | || |||||||||||||| | ||||| Sbjct 2790597 AGGTTATCGTCTTGCCCGTAAGGGTTTT 2790570 >seq20 Length=2461668 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 |||| |||| || || || | | || || |||||||| | |||||| |||||||||| Sbjct 1189127 CTTTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTTCCAGCGAAGA 1189068 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | || || || || || || ||||| || |||||||| |||||||| || || | Sbjct 1189067 TGAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTTCT 1189008 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 ||||||| || || | ||||| || | ||||| |||||||| || | || || | || Sbjct 1189007 CGATGGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACGA 1188948 Query 225704 ACACTTGCAT 225713 | | ||||| Sbjct 1188947 AGATCTGCAT 1188938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192516898569584