Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq38 156 4e-33 >seq38 Length=2292016 Score = 156 bits (172), Expect = 4e-33 Identities = 150/190 (79%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 |||||||||||||||||||| ||||||||||||||| | |||||| ||||| | || Sbjct 218944 ATATAAGTGTCTATTAGTAGAGAATACATTTCAGAATGAACATTTTCCATAGCCACTTGG 218885 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937 ||||| |||||||||| |||||| || ||||| ||||| | || ||| | |||||| | Sbjct 218884 AATCCATAAAAGCATCGAGCTTCCGTAACTTGTACTTCCTGACTAAACCGTTCTACAAGA 218825 Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAA-GTA 4996 ||||| || || ||||| ||| || ||||| || || | ||||| || ||||| ||| Sbjct 218824 TTTTCATTGACGATACCATCAGAAGCAGCAAAGAATGCAAGGACATGTGAAATAAATGTA 218765 Query 4997 CTGTTCGTCA 5006 | |||||||| Sbjct 218764 C-GTTCGTCA 218756 Score = 123 bits (136), Expect = 2e-23 Identities = 143/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 4382 GTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCAC 4441 |||||| |||||||| |||||||||| |||||||| |||||| || ||||| | | || Sbjct 219542 GTCAGCAACAAATTCAATATACTGGCACATGAGTTTGCAGTTCATACCAATCATTTCAAC 219483 Query 4442 AGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGC-TTCTGTGATTATATCTT 4500 ||||| || | ||||||||| ||||||||||| ||||| |||| | || || | Sbjct 219482 TGGTAGAGCATCTGTCAAAAATTCTTGTTCTATTTCAACGGCATTCT-TTATAATGGATG 219424 Query 4501 TTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCAC 4560 | | ||||| || ||||| | ||| | | | ||||| ||||||||||| |||| Sbjct 219423 TAACGCGTTCTTTCGACGGTTTTTGTACAATATGTTTAAACATCAAACACGCAAAGTCAC 219364 Query 4561 AATGCAAACC 4570 |||||||||| Sbjct 219363 AATGCAAACC 219354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427044728431688