Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq116 165 1e-35 seq38 87.8 2e-12 >seq116 Length=4125705 Score = 165 bits (182), Expect = 1e-35 Identities = 234/322 (73%), Gaps = 14/322 (4%) Strand=Plus/Plus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||| || ||||| || | ||||| || ||| |||||| ||||| ||||||||||||| Sbjct 2591964 TACCTATTGGTCTGTGCTTTTTATTCGATCTTTCAGCTTCCGGAATGGGATAATAATTAA 2592023 Query 77584 TGTCTATAATTTTATTGAGATTTC---TAACAACTACTTTAACCACGTCCTTTAGTTTAA 77640 | ||||| | || || ||||| | ||||||| |||| | || || || ||||||| Sbjct 2592024 TATCTATGACCTTGTTTAGATTGCGTGTAACAAC--CTTTG-CGACTTCTTTCAGTTTAA 2592080 Query 77641 GAAAATCAAATCT-----TCCATCTAT-AACAAACATGTTCAAAGCTATAGATGCTAGAT 77694 ||| |||||| | | | || |||||||||||||| |||||| || |||| || Sbjct 2592081 CAAAGTCAAATTTCTTGGTGGAAGGATTAACAAACATGTTCACAGCTATGGAAGCTAAAT 2592140 Query 77695 TACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTAC 77754 | || || ||||| |||| || ||| ||| | | || || ||||| ||||| || | Sbjct 2592141 TGCATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTGC 2592200 Query 77755 ATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGA 77813 ||| || ||||| ||||||||||| || || |||||| ||| || ||||| || Sbjct 2592201 TTTTAATTGTGCCTAGATTTTGTTGATTCGATTTACGATTGCAGTGA-TCTTTATACAGC 2592259 Query 77814 ATAAACGGAGTCCCGGTTTCAA 77835 || ||||||| || ||||||| Sbjct 2592260 ATGTACGGAGTTCCAGTTTCAA 2592281 Score = 156 bits (172), Expect = 6e-33 Identities = 221/311 (71%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 || |||||||| ||||| || || ||||| || | ||||| | |||||||||||| | | Sbjct 2592663 TTACCTGTATTTTTTTTGAGTTCTAGAAATTCAAAGATATCGGCATGCCATGGTTCCAAA 2592722 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 || ||||| | | | || |||| ||||||||| || ||||| | ||| | || || ||| Sbjct 2592723 TACATTGCAAAAGCACCTGGTCTTTTATTACCACCTTGATCGACATAACGAGCAGTATTA 2592782 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 ||||| || | | ||| || | | ||| |||||| |||||| || || || || | Sbjct 2592783 TTATATACACGAATCATGGGTACCAAACCATTAGATTCTCCATTAGTGCCTGATATTCTA 2592842 Query 78249 CTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATT 78308 |||| | || | |||| | |||| || || |||||||| || ||| || Sbjct 2592843 GTTCCTTTCGCTCTAATACAATTAATACTTAGTCCGATTCCTCCGGCTGATTTACTGATA 2592902 Query 78309 AGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGA 78368 ||||| || | |||||||||||| || || ||||| || || || || |||| | || Sbjct 2592903 AGAGCACATCTTTTCAATGTATCATAAATGCCCTCGATGCTATCTTCGCTCATTGTCAGC 2592962 Query 78369 AGAAAACAGCT 78379 || |||||||| Sbjct 2592963 AGGAAACAGCT 2592973 Score = 118 bits (130), Expect = 1e-21 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 78410 AAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT 78469 ||||| ||| || || ||||| ||||| | || || | | |||||||||||| || Sbjct 2593086 AAATAGTGTAGGTGAAGCATGAGTAAAGTAGCGCTCCGATAAGAAATTGTATGTTTCTAT 2593145 Query 78470 AGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGG 78529 | | ||| || ||| || ||||||| | || ||||||||||| | ||||||||| || Sbjct 2593146 AACCTTTTCAATATCCTCTTCATGAATTGCCACAGCTACACGCATTAGCATATGCTGTGG 2593205 Query 78530 TCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACC 78589 ||||||||| || ||| || || | | ||| | | || | ||||||||||| Sbjct 2593206 TCTTTCAACGACTTTGCGATTAATCTTTAGTAGGTAACTTCTCTCAAGGGTTTTAAAACC 2593265 Query 78590 AAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 ||| || || || ||| ||||| || |||||||| ||||||| Sbjct 2593266 AAAGTAATTATAACTAAAATCTCTATCATAAATAATTGCAGAATT 2593310 Score = 113 bits (124), Expect = 6e-20 Identities = 175/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 77052 ATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGA 77111 || ||| ||| || || || || ||||||| ||| || || | || | | ||| Sbjct 2591328 ATTATTTCATTTTTCATGTCTTCGTTCCACATATTCTGTTCCGTAAGGTCTTTCAACAGA 2591387 Query 77112 TGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTA 77171 ||||| || || || ||||| ||||| || | |||| || || || || |||||||| Sbjct 2591388 TGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTGGTG 2591447 Query 77172 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGT 77231 || ||||| | ||||| |||||||||||||| || || ||||| || || ||||| || Sbjct 2591448 TACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATTGGG 2591507 Query 77232 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA 77291 || | | ||| ||| | | ||| ||| || ||||| ||||| ||| | ||| Sbjct 2591508 GCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCCCAG 2591567 Query 77292 TCCCAAAGAT 77301 | |||||||| Sbjct 2591568 TTCCAAAGAT 2591577 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 |||||||| | |||||||||||||| |||||||| || || | || ||||| || || Sbjct 2592436 TTCAAATTTTTTGCCCCAAACATCATCTAATCCAGGACACTCGTGAGGACACATTAAAGA 2592495 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| | ||||| || |||||||||||||| |||||||| ||||| | ||| ||| Sbjct 2592496 CCATTTGCCATCGTCAAAGACTCGTTTCATAAACAGATCAGGAATCCACAAGGCATAAAA 2592555 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 | |||| | | ||| || || || |||||| Sbjct 2592556 CAATTCTCTTGCACGATGCTCCTCTTTGCCTGTA 2592589 >seq38 Length=2292016 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 47946 TTTTTAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATC 48005 ||| || | |||||||| | || || || ||||| ||||| ||||| ||| Sbjct 219571 TTTGTACAACCTAATTCGACCAGAAGCCTGTCAGCAACAAATTCAATATACTGGCACATG 219512 Query 48006 ATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCG 48065 | || || ||||| || || | || |||||||||||| || || | ||| |||||||| Sbjct 219511 AGTTTGCAGTTCATACCAATCATTTCAACTGGTAGAGCATCTGTCAAAAATTCTTGTTCT 219452 Query 48066 ATAGTGACAGCATCCACTATTATCGATGTTAC-CG---TTTCCTCACTTGGTGGATACAA 48121 || || |||| | ||| || ||||| || || |||| | || || |||| Sbjct 219451 ATTTCAACGGCATTCTTTATAATGGATGTAACGCGTTCTTTCGACGGTTTTTG--TACA- 219395 Query 48122 CAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACC 48163 | |||||||||||| ||||| ||||| |||||||| | ||| Sbjct 219394 -ATATGTTTAAACATCAAACACGCAAAGTCACAATGCAAACC 219354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694660672375040