Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq116 178 2e-39 >seq116 Length=4125705 Score = 178 bits (196), Expect = 2e-39 Identities = 226/311 (73%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 || |||||||| ||||| || ||||| || || | ||||| | |||||||||||| | | Sbjct 2592663 TTACCTGTATTTTTTTTGAGTTCTAGAAATTCAAAGATATCGGCATGCCATGGTTCCAAA 2592722 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 || || || | | |||| |||| ||||||||| || ||||| | ||| | ||||| ||| Sbjct 2592723 TACATTGCAAAAGCACCTGGTCTTTTATTACCACCTTGATCGACATAACGAGCAGTATTA 2592782 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 ||||| || | | ||| || | | || |||||| ||||| || || || || | Sbjct 2592783 TTATATACACGAATCATGGGTACCAAACCATTAGATTCTCCATTAGTGCCTGATATTCTA 2592842 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 |||| || | |||| | ||||| ||| || |||||||| || |||| ||| Sbjct 2592843 GTTCCTTTCGCTCTAATACAATTAATACTTAGTCCGATTCCTCCGGCTGATTTACTGATA 2592902 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGA 76963 |||||||| | ||||||||| ||||| |||||||| || ||||| || |||| | || Sbjct 2592903 AGAGCACATCTTTTCAATGTATCATAAATGCCCTCGATGCTATCTTCGCTCATTGTCAGC 2592962 Query 76964 AGAAAACAGCT 76974 || |||||||| Sbjct 2592963 AGGAAACAGCT 2592973 Score = 149 bits (164), Expect = 9e-31 Identities = 229/320 (72%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 76119 TACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAA 76178 |||| || ||||| || | ||||| || |||||||||| ||||| || |||||||||| Sbjct 2591964 TACCTATTGGTCTGTGCTTTTTATTCGATCTTTCAGCTTCCGGAATGGGATAATAATTAA 2592023 Query 76179 TATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAA 76238 ||||||| | || || ||||| | ||| || || | || || || ||||| | || Sbjct 2592024 TATCTATGACCTTGTTTAGATTGCGTGTAACAACCTTTGCGACTTCTTTCAGTTTAACAA 2592083 Query 76239 AATCAAATTT-TCCATCTA-----TCACAAACATATTAAGAGCTATAGATGCTAGATTAC 76292 | |||||||| | | | | |||||||| || | |||||| || |||| ||| | Sbjct 2592084 AGTCAAATTTCTTGGTGGAAGGATTAACAAACATGTTCACAGCTATGGAAGCTAAATTGC 2592143 Query 76293 AAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACT 76352 | |||||||| |||| || | ||| ||| | | || || || || ||||| || | | Sbjct 2592144 ATACGGCTACTTCATCAGGACTGGAATACTCAACGATTTCTGTACAGAGATTGCTGCTTT 2592203 Query 76353 TGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG-TTACA-TGAGTCCTTATAAAGAAC 76410 | || || || ||||||||||| || | ||| | || || ||| || ||||| || | Sbjct 2592204 TAATTGTGCCTAGATTTTGTTGATT-CGATTTACGATTGCAGTGA-TCTTTATACAGCAT 2592261 Query 76411 AAACGGAGTTCCAGTTTCAA 76430 |||||||||||||||||| Sbjct 2592262 GTACGGAGTTCCAGTTTCAA 2592281 Score = 113 bits (124), Expect = 6e-20 Identities = 177/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 75647 ATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCT-CGGTTAAAACTCTAAGGAG 75705 || ||| ||| || || || || ||||||| | |||| | | || | || | | || Sbjct 2591328 ATTATTTCATTTTTCATGTCTTCGTTCCACA-TATTCTGTTCCGTAAGGTCTTTCAACAG 2591386 Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 |||||| || || || ||||| ||||| || | |||| ||| || || || |||||||| Sbjct 2591387 ATGAGGGTTTACGATCTGAAACTCTCCGGAGAGGACTCGTCGGGTATAGATGTTACTGGT 2591446 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 || ||||| | ||||| |||||||||||||| || || || || || || ||||| || Sbjct 2591447 GTACGGTTCAATGGATTCGTTGTTTCCCAAAATCTGTGCTGTAGATGCCGTAGGCATTGG 2591506 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 || | | ||| ||| | | ||| ||| || ||||| ||||| ||| | ||| Sbjct 2591507 GGCGATAAGCAAAGAATTGCGAACACCGTGTTTTGCTATTTTTTCTTTCAGAGCTGCCCA 2591566 Query 75886 ATCCCAAAGAT 75896 | |||||||| Sbjct 2591567 GTTCCAAAGAT 2591577 Score = 113 bits (124), Expect = 6e-20 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 77005 AAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAAT 77064 ||| | |||||| || |||||||| || | || || | | |||||||||||| || Sbjct 2593086 AAATAGTGTAGGTGAAGCATGAGTAAAGTAGCGCTCCGATAAGAAATTGTATGTTTCTAT 2593145 Query 77065 AACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGG 77124 ||| ||| |||||| || ||||||| | ||||| |||||||| | ||||||||| || Sbjct 2593146 AACCTTTTCAATATCCTCTTCATGAATTGCCACAGCTACACGCATTAGCATATGCTGTGG 2593205 Query 77125 TCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACC 77184 || ||| || || ||| || || | | ||| | | || | ||||||||||| Sbjct 2593206 TCTTTCAACGACTTTGCGATTAATCTTTAGTAGGTAACTTCTCTCAAGGGTTTTAAAACC 2593265 Query 77185 AAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATT 77229 ||| || || || ||| ||||| || |||||||| | ||||| Sbjct 2593266 AAAGTAATTATAACTAAAATCTCTATCATAAATAATTGCAGAATT 2593310 Score = 93.3 bits (102), Expect = 6e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGA 76578 |||||||| | |||||||||||||| || |||||||| || | |||||||| || || Sbjct 2592436 TTCAAATTTTTTGCCCCAAACATCATCTAATCCAGGACACTCGTGAGGACACATTAAAGA 2592495 Query 76579 CCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 76638 ||| | ||||| || || ||||||||||| |||||||| ||||| | ||| ||| Sbjct 2592496 CCATTTGCCATCGTCAAAGACTCGTTTCATAAACAGATCAGGAATCCACAAGGCATAAAA 2592555 Query 76639 TAGATCTCGGGTTCTACGTTCTTCATTTCCTGTA 76672 | |||| | | | | || || || |||||| Sbjct 2592556 CAATTCTCTTGCACGATGCTCCTCTTTGCCTGTA 2592589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712926058667520