Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq116 154 3e-32 seq20 93.3 1e-13 >seq116 Length=4125705 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || ||||| ||||||||||| || |||| |||||| | ||||| Sbjct 2789854 AGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGATAAAGTACGGCCATCC 2789795 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| || ||||| ||||| || ||||||||||| | | |||||||||||| ||| Sbjct 2789794 TCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 2789735 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||| | |||| ||| ||| ||||| || || || || Sbjct 2789734 TGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACTTCCAGGGTGATGGTC 2789675 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| ||||||||||| || || | ||||||| Sbjct 2789674 TTGCCAGTGAGAGTCTTAACAAAAATCTGCATT 2789642 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || ||||| || |||||||||||||||| ||| || | ||||| Sbjct 2790994 AGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGATAATGTGCGTCCATCC 2790935 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| |||||||| || | ||| ||||||| | ||||||||||| ||| Sbjct 2790934 TCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCTTCCTTATCT 2790875 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| || || |||| | |||| || ||| ||||| ||||| || ||| Sbjct 2790874 TGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGAGTGATGGTT 2790815 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| ||||||||||||| |||||| Sbjct 2790814 TTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || ||||| || |||||||||||||||| ||||| | || || Sbjct 2789415 AGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCC 2789356 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| | ||||||||| || | | ||||| ||||| ||| Sbjct 2789355 TCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCT 2789296 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | |||| ||| ||| || || || ||||| || Sbjct 2789295 TGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTC 2789236 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || | ||||| || || | |||||| || Sbjct 2789235 TTCCCAGTCAATGTCTTGACAAAAATCTGCATGTT 2789201 Score = 116 bits (128), Expect = 9e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || ||||| || ||||||||||| |||| | ||| | ||||| Sbjct 2789626 AGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 2789567 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| || ||||| ||||| || |||||||| || | | ||||| ||||| || Sbjct 2789566 TCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGAATTCCCTCCTTGTCC 2789507 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| || || |||| | | | || ||| ||| ||||| || || || || Sbjct 2789506 TGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGACTTCCAGGGTGATGGTC 2789447 Query 152073 TTGCCCGTGAGAGTCTTCACGA 152094 ||||| || || ||||| |||| Sbjct 2789446 TTGCCGGTAAGGGTCTTAACGA 2789425 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || |||||||| | ||||| || ||||||||||| ||||||||||| | ||| || | Sbjct 2790088 AGCCTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGATAATGTGCGA 2790029 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||||| || ||||||||||| | ||| || || || | | |||||||| Sbjct 2790028 CCATCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCCTTCT 2789969 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || ||||| || || || | || | |||| || ||| || || | ||| Sbjct 2789968 TTGTCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACCTCCAATGTA 2789909 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || ||||| || |||| ||||||| Sbjct 2789908 ATGGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCATT 2789870 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| | ||| |||||||| || ||||| || || ||||| | | || | Sbjct 2790316 AGTCGCAGGACTAAATGCAGAGTAGATTCCTTTTGAATATTATAATCAGACAGCGTGCGA 2790257 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||||| || || |||||||| | ||||||||||| | | |||||||||| Sbjct 2790256 CCATCTTCTAATTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCGGGTGGGATTCCTTCC 2790197 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || ||| || |||| | | | || || || || || | ||| Sbjct 2790196 TTGTCCTGGATCTTAGCTTTAACGTTCTCAATGGTATCGGATGCTTCGACCTCCAAAGTG 2790137 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || |||||||| || |||| ||||||| Sbjct 2790136 ATGGTCTTACCTGTAAGAGTCTTAACAAAGATCTGCATT 2790098 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || | |||||| | |||||||| || |||||||| || | | |||| Sbjct 2790772 AGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAAAGCGTTCGA 2790713 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||| || | ||| || |||||||| | |||||||||||| | || ||| |||||| Sbjct 2790712 CCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGGATCCCTTCC 2790653 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || |||||||| ||| || | || | | |||| || || || || | || Sbjct 2790652 TTATCCTGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCACCTCCAAGGTT 2790593 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| || || || || || | |||||| Sbjct 2790592 ATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 >seq20 Length=2461668 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAA 151972 |||| |||||||| || || | | || || |||||||| | ||||| || ||||| Sbjct 1189127 CTTTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTT--CCAGCGAA 1189070 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || | |||||| |||| | || || ||||| || || || || |||||| | Sbjct 1189069 GATGAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTGACGTT 1189010 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 ||| | | | || || ||| || || || || || || ||||| || || |||||||| Sbjct 1189009 CTCGATGGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTTAGGGTCTTCAC 1188950 Query 152093 GAAGACCTGCAT 152104 ||||| |||||| Sbjct 1188949 GAAGATCTGCAT 1188938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153806962804056