Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq116 178 3e-39 seq20 147 5e-30 seq25 105 1e-17 seq23 93.3 9e-14 seq87 86.0 1e-11 seq70 86.0 1e-11 seq65 86.0 1e-11 seq64 86.0 1e-11 seq17 86.0 1e-11 seq3 86.0 1e-11 >seq116 Length=4125705 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | || || ||||||||||| ||||| | Sbjct 2789869 CCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGAT 2789810 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || |||||||||||||| || || ||||||||||| | | || ||||| || Sbjct 2789809 AAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 2789750 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || ||||| | ||||| ||||| ||||| |||||| Sbjct 2789749 ATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACT 2789690 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || || ||||| ||||| || || | ||||||||| || ||||||||| Sbjct 2789689 TCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCATT 2789642 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||||||||| | ||||| ||| || || ||||||||||| || | Sbjct 2791009 CCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGAT 2790950 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||| |||||||| ||||||||||| || ||||| | || |||||||| ||| Sbjct 2790949 AATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGA 2790890 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||| || || | |||||| | ||||| |||||||| || |||||| Sbjct 2790889 ATTCCTTCCTTATCTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGACT 2790830 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || || | ||||| ||||| |||||||| Sbjct 2790829 TCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 161 bits (178), Expect = 2e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | || || || |||||||||||||| | Sbjct 2789641 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2789582 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||||||||| || || ||||||||||| | | || || || ||| Sbjct 2789581 AGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGA 2789522 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || |||||||| || ||| | ||||| || || ||||| |||||| Sbjct 2789521 ATTCCCTCCTTGTCCTGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGACT 2789462 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 || || ||||| ||||| || || | |||||||||| Sbjct 2789461 TCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGA 2789425 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| |||| ||| | | | ||||| || ||||||||||| | Sbjct 2790782 ACCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGA 2790723 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||| || |||||||| | |||||| || || ||||| || | || ||||| ||| Sbjct 2790722 AAGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGG 2790663 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| || || || || ||||| ||| | ||||| |||||||| ||||| || Sbjct 2790662 GATCCCTTCCTTATCCTGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCAC 2790603 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | || |||||||| ||||| | || || || || |||||||| Sbjct 2790602 CTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282875 ACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAG 282934 || |||||| || || ||||| || | || || || ||||||||||| || | | Sbjct 2789428 ACGACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAA 2789369 Query 282935 CGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAAT 282994 || || || ||||| ||||| || ||||| |||||||| | || || || ||||| Sbjct 2789368 AGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAAT 2789309 Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||| ||||| ||||| | ||||| | || |||||||| ||||| ||||| || Sbjct 2789308 TCCCTCCTTATCTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTC 2789249 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| || || ||||| || ||||| ||||| || || |||||||| || Sbjct 2789248 GAGGGTAATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCATGTT 2789201 >seq20 Length=2461668 Score = 147 bits (162), Expect = 5e-30 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 282904 TGCTTT--CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCC 282961 |||||| |||| |||||||| ||||||| |||||| | |||||| || | || || || Sbjct 1189135 TGCTTTACCTTTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTTCC 1189076 Query 282962 GGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTT 283021 || ||||| | ||| || || || ||||| ||||||||||| |||||||| ||||| Sbjct 1189075 AGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTT 1189016 Query 283022 TACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGT 283081 ||| | ||||| || || || || || || ||||| ||||| ||||| || || | || Sbjct 1189015 GACGTTCTCGATGGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTTAGGGT 1188956 Query 283082 CTTAACGAATATCTGCAT 283099 ||| ||||| |||||||| Sbjct 1188955 CTTCACGAAGATCTGCAT 1188938 >seq25 Length=4911174 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 || |||||||| | | ||||| ||| || ||||| ||||||| ||| || ||| Sbjct 1973841 GTAAAAATGTAACGAGGGCTCGCGGAGTCTTTACCACCACAAAGCCTCGTACCGAATTGA 1973782 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || | ||| | ||| | ||||||||||||||||||||| | | || || | ||| | | Sbjct 1973781 CCATTGGGTTGAAGCAAATTTATGTTGTTGCTACCGACGAAGTTTTGTGCTAAATTAATG 1973722 Query 273900 ATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCA 273959 || || || |||||| || ||||| |||||||| ||| |||||||| | ||||| Sbjct 1973721 ATGGTTGCCATAAGGGACACTTCGCCATGGTGATACGCGGAATGTTCGGCAACTGAACCA 1973662 Query 273960 CTGAACTGAGCAACCTTCACATC 273982 | ||| || ||||| || || Sbjct 1973661 GATAGCTGCGCTACCTTGACTTC 1973639 >seq23 Length=3064571 Score = 93.3 bits (102), Expect = 9e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||| || ||||| ||||||||||| || | ||||| || || || ||||| || | Sbjct 1521582 TACCCTCTTTATCTTGAATCTTTGCTTTGACATTTTCGATGGTATCAGAGGCTTCAACCT 1521641 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || || ||||| ||||| |||||||| || || |||||||| Sbjct 1521642 CAAGGGTAATGGTCTTCCCCGTTAAAGTCTTTACAAAAATCTGCAT 1521687 >seq87 Length=371117 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 90132 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 90076 >seq70 Length=2372050 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2056172 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2056228 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2059800 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2059856 >seq65 Length=1316160 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 699243 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 699299 >seq64 Length=2089853 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1287257 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 1287201 >seq17 Length=2940332 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 314073 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 314017 >seq3 Length=3390926 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 3381637 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 3381581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046726646980144