Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq38 123 3e-23 >seq38 Length=2292016 Score = 123 bits (136), Expect = 3e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 ||||| || || ||||||| | ||||||||||||||||| |||||| ||||| | || Sbjct 218944 ATATAAGTGTCTATTAGTAGAGAATACATTTCAGAATGAACATTTTCCATAGCCACTTGG 218885 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAA 23898 || |||||||| |||| |||||| | | ||| || || | | ||| | || | | | Sbjct 218884 AATCCATAAAAGCATCGAGCTTCCGTAACTTGTACTTCCTGACTAAACCGTTCTACAAGA 218825 Query 23899 TTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACAT 23944 ||||| || || ||||||||| |||||||||||| ||||| |||| Sbjct 218824 TTTTCATTGACGATACCATCAGAAGCAGCAAAGAATGCAAGGACAT 218779 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||| ||| | ||||||| ||| || | || ||||| | ||||| |||||| Sbjct 219269 TCATCTCTAGAAATAAGTTCATTACTAAAGGTAAGGCCAGGCATGAGTCCTCTTTTTTTC 219210 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| || || || ||||| || ||||||||||||||| ||||| ||||||||| Sbjct 219209 AACCAGAAAATAGCTGCAAAACTGCCACTAAAGAAAATACCCTCTACAGCAGCAAAGGCC 219150 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 |||| ||| |||||||| || | || | |||||| ||| || ||| || || Sbjct 219149 ACAACACGCTCCCCAAATGTCGCGGATTCATGATTAATCCAATTTAGTGCCCAGTTTGCT 219090 Query 23713 TTC 23715 ||| Sbjct 219089 TTC 219087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521481898590400