Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq116 123 2e-23 seq20 111 1e-19 >seq116 Length=4125705 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | || ||||||||||| || |||||| ||||||||||| || Sbjct 2789645 CATTCCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 2789586 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| ||||||||||| | | ||||||||||| Sbjct 2789585 GGACAGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGG 2789526 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| ||| ||||| ||| | | |||| | ||||| |||| | | Sbjct 2789525 TGGAATTCCCTCCTTGTCCTGAATCTT-TGCCTTCACGTTCTCGATGGTATCGGAAGCCT 2789467 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || |||| || || ||||| || || |||||||| |||| Sbjct 2789466 CGACTTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGA 2789425 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||| || || | || | ||||||||| ||| ||||| ||||||||||| Sbjct 2790101 CATTCCACCTCGAAGCCTGAGGACTAAGTGAAGCGTTGACTCTTTTTGAATGTTGTAATC 2790042 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | ||| | || || | |||||| ||||| |||||||| | || ||||||| Sbjct 2790041 AGATAATGTGCGACCATCTTCTAACTGCTTGCCGGCGAAGATCAACCTTTGTTGATCTGG 2789982 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || ||| ||||| ||| | || | || ||||||| | || Sbjct 2789981 GGGAATTCCTTCTTTGTCCTGAATCTTGGCCTTAACGTTTTCAATTGTGTCGGATGCCTC 2789922 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| ||||| || || |||||||| || ||||| ||||| Sbjct 2789921 CACCTCCAATGTAATGGTCTTGCCTGTAAGGGTCTTAACAAAGATCTGCAT 2789871 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || |||||| |||||||||||||||| | || |||| ||| Sbjct 2789412 ACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTACGTCCGTCCTCC 2789353 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| |||||||| | ||||||||| | || | || ||||| || Sbjct 2789352 AGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCCTCCTTATCTTGA 2789293 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | || | || ||||||| | || ||||| | ||||| ||||| Sbjct 2789292 ATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAGGGTAATGGTCTTC 2789233 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | ||||| || || || |||||| Sbjct 2789232 CCAGTCAATGTCTTGACAAAAATCTGCATG 2789203 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | || ||||||||||| || ||||||||||||||| || || Sbjct 2789873 CATTCCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTC 2789814 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || | || | || || |||||||| ||||||||||| | | |||||| |||| Sbjct 2789813 GGATAAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGG 2789754 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || |||||| ||| | | | || ||||||| | || Sbjct 2789753 TGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTC 2789694 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || || ||||| || ||||| ||||| || || || ||||| Sbjct 2789693 GACTTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| | ||| || || |||||||| || | || || | || ||| Sbjct 2790763 ACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAAAGCGTTCGACCATCCTCC 2790704 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | || || || || ||||| || | |||||| |||| || | |||||||| ||| Sbjct 2790703 AATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGGATCCCTTCCTTATCCTGA 2790644 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || |||| || ||| | |||||||| | | ||||||||||| || |||||||| Sbjct 2790643 ATTTTG-GCTTTAACGTTTTCGATGGTGTCCGATGCTTCCACCTCCAAGGTTATCGTCTT 2790585 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| || || || || ||||| Sbjct 2790584 GCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 44135 TGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGC 44194 || || ||| |||||| |||||||||||||||| | | ||| | || || || || Sbjct 2790985 TGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGATAATGTGCGTCCATCCTCGAGTTGT 2790926 Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 ||||| || ||||| | ||||| || || | || | |||||||| || || || Sbjct 2790925 TTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGGAATTCCTTCCTTATCTTGAATTTTG 2790866 Query 44255 TGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||| | |||| | || ||||| | | || || |||| || || || || || || Sbjct 2790865 ACCTT-TACGTTCTCGATCGTGTCCGACGCCTCGACTTCCAGAGTGATGGTTTTCCCGGT 2790807 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||||||| ||||| Sbjct 2790806 GAGGGTCTTCACGAAGATCTGCAT 2790783 >seq20 Length=2461668 Score = 111 bits (122), Expect = 1e-19 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || |||| |||||| || || ||||| | |||||||||||| | ||| | || ||||| Sbjct 1189092 TCTTCCAACTGCTTTCCAGCGAAGATGAGACGCTGCTGATCCGGAGGAATGCCCTCCTTG 1189033 Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| ||||| |||| | |||| | ||||| |||| | |||||||| | || || Sbjct 1189032 TCCTGGATCTTA-GCTTTGACGTTCTCGATGGTATCGGACGCCTCCACCTCGAGGGTGAT 1188974 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||||| || || ||||||||||||||||| ||||||||| Sbjct 1188973 GGTCTTGCCTGTTAGGGTCTTCACGAAGATCTGCATGATG 1188934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986293409512