Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq20 170 5e-37 seq116 141 2e-28 >seq20 Length=2461668 Score = 170 bits (188), Expect = 5e-37 Identities = 150/187 (80%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || ||||| || || ||||||||||||||||| || || Sbjct 1188941 CAGATCTTCGTGAAGACCCTAACAGGCAAGACCATCACCCTCGAGGTGGAGGCGTCCGAT 1189000 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||||||| ||||| |||||||| || || || |||||||| ||||| Sbjct 1189001 ACCATCGAGAACGTCAAAGCTAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAGCAG 1189060 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| ||| | |||||||| ||||| ||| | || |||||| || Sbjct 1189061 CGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGCAGGACGCTTTCTGACTATAACATC 1189120 Query 178104 CAAAAAG 178110 || |||| Sbjct 1189121 CAGAAAG 1189127 >seq116 Length=4125705 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || |||||||| || || || |||||||| || || || || ||| Sbjct 2789646 CAGATTTTTGTTAAGACTCTCACTGGCAAGACCATCACCCTGGAAGTCGAGGCTTCCGAC 2789705 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| || ||||| ||||||||||| || |||||||| Sbjct 2789706 ACGATCGAGAATGTAAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAG 2789765 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| ||||| || ||||| || ||||| | ||| | |||| |||||| || Sbjct 2789766 AGACTCATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGTACTTTATCCGACTATAACATC 2789825 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || || || || || || || Sbjct 2789826 CAAAAGGAGTCGACCCTTCACCTGGT 2789851 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || ||||| |||||| | || ||||| || ||| Sbjct 2790330 CAGATCTTCGTTAAAACGCTCACTGGCAAAACAATCACCTTAGAAGTGGAGGCGTCCGAC 2790389 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| ||||||||||| |||||||| || |||||||| ||||| Sbjct 2790390 ACGATTGAAAACGTCAAAACTAAGATTCAGGATAAAGAAGGCATTCCTCCGGATCAGCAG 2790449 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || ||||||||||| | || || |||| || || | Sbjct 2790450 AGATTAATCTTTGCTGGCAAGCAACTCGAAGATGGCCGTACCCTCTCCGACTACAATATT 2790509 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||||||| || Sbjct 2790510 CAGAAGGAGTCCACTCTGCATCTCGT 2790535 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || ||||| ||||| || || || || || ||| Sbjct 2790786 CAGATCTTCGTGAAGACCCTCACCGGGAAAACCATCACTCTGGAAGTCGAGGCGTCGGAC 2790845 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || || ||||| || || |||||||| || |||||||| || Sbjct 2790846 ACGATCGAGAACGTAAAGGTCAAAATTCAAGATAAGGAAGGAATTCCCCCGGACCAACAG 2790905 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || ||||| ||||| |||||| | || | ||||||| ||| || Sbjct 2790906 CGACTCATCTTCGCTGGGAAACAACTCGAGGATGGACGCACATTATCCGATTACAACATC 2790965 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || || || || || || ||| Sbjct 2790966 CAGAAGGAGTCCACCCTACAT 2790986 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| ||||| || || ||||| | ||||| ||| || || Sbjct 2790102 CAGATCTTTGTTAAGACTCTTACAGGTAAGACCATCACTTTGGAGGTCGAAGCATCCGAT 2790161 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| ||| ||||| |||||||| ||||||||||| || |||||||| Sbjct 2790162 ACCATTGAGAACGTTAAAGCTAAGATCCAGGACAAGGAAGGAATCCCACCCGACCAGCAG 2790221 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || || || | |||||||| | || || | |||||||| | Sbjct 2790222 AGATTGATCTTCGCTGGCAAGCAATTAGAAGATGGTCGCACGCTGTCTGATTATAATATT 2790281 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| || |||||| | || || |||| Sbjct 2790282 CAAAAGGAATCTACTCTGCATTTAGTCCTGCGACT 2790316 Score = 136 bits (150), Expect = 1e-26 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || || || || ||||| ||| | ||||||||| || ||| Sbjct 2790558 CAGATTTTTGTCAAAACCCTTACGGGCAAGACGATAACCTTGGAGGTGGAAGCATCGGAC 2790617 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| || |||||||| || ||||| ||||| || |||||||| Sbjct 2790618 ACCATCGAAAACGTTAAAGCCAAAATTCAGGATAAGGAAGGGATCCCGCCAGACCAGCAG 2790677 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | |||||||| |||||||| | || ||||| | || ||| | || || ||| | Sbjct 2790678 AGGTTAATCTTCGCTGGAAAACAATTGGAGGATGGTCGAACGCTTTCAGACTACAACATT 2790737 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || ||||| |||| || ||| | ||| | |||| Sbjct 2790738 CAGAAAGAGTCAATGCTTCATTTGGTTCTTCGACT 2790772 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || || |||||||| || || || || || ||||||| Sbjct 2789425 TCGTTAAGACCCTTACCGGCAAGACCATCACCCTGGAAGTCGAGGCTTCCGATACCATCG 2789484 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 ||||||| || ||||||||||||||| || ||||| || || || ||||| |||| | Sbjct 2789485 AGAACGTGAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCAGATCAGCAGAGACTCA 2789544 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| ||||| || ||||| || ||||| | ||||| |||| || ||| |||| || | Sbjct 2789545 TCTTTGCCGGCAAGCAGCTAGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGG 2789604 Query 178111 AATCAACACTGCATCTTGT 178129 | || || || || || || Sbjct 2789605 AGTCGACCCTTCACCTGGT 2789623 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || ||||| || || || || | |||||||| || ||| Sbjct 2789874 CAGATCTTTGTTAAGACCCTTACAGGCAAGACCATTACATTGGAGGTGGAGGCATCCGAC 2789933 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||||||||||||||||||||| || || || || ||| Sbjct 2789934 ACAATTGAAAACGTTAAGGCCAAGATTCAGGACAAAGAAGGAATTCCCCCAGATCAACAA 2789993 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||| || ||| | |||||||| | || | | ||||| ||| | Sbjct 2789994 AGGTTGATCTTCGCCGGCAAGCAGTTAGAAGATGGTCGCACATTATCTGATTACAACATT 2790053 Query 178104 CAAAAAGAATCAACACTGCA 178123 |||||||| ||||| || || Sbjct 2790054 CAAAAAGAGTCAACGCTTCA 2790073 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | || || || || || ||||||||||| || || ||| Sbjct 2789207 CAGATTTTTGTCAAGACATTGACTGGGAAGACCATTACCCTCGAGGTCGAGGCTTCCGAC 2789266 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || |||||||| || || || ||||| || || || ||||| Sbjct 2789267 ACTATTGAAAATGTAAAGGTGAAGATTCAAGATAAGGAGGGAATTCCACCCGATCAGCAG 2789326 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||||||||| || || || || || ||| | ||| | ||||||| ||| || Sbjct 2789327 AGGTTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACTTTGTCCGATTACAACATC 2789386 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 2789387 CAGAAGGAGTCGACCCTTCACCTGGT 2789412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203716764253584