Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orussus_20abietinus_20[refseq_20GCF_5F000612105.1_202014-04-05] 936 sequences; 201,220,334 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq116 118 1e-21 seq20 96.9 3e-15 >seq116 Length=4125705 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| ||| |||||||||||| || ||||||||| Sbjct 2790553 CCACCACGAAGTCGAAGGACGAGATGCAGAGTGGACTCCTTCTGAATATTGTAGTCGGAG 2790494 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||| |||||||| || || || | | ||| || |||| ||| Sbjct 2790493 AGGGTACGGCCATCTTCGAGTTGCTTGCCAGCAAAGATTAATCTCTGCTGATCCGGAGGA 2790434 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || || ||| ||| | || | || ||| | | |||||| || |||||| Sbjct 2790433 ATGCCTTCTTTATCC-TGAATCTTAGTTTTGACGTTTTCAATCGTGTCGGACGCCTCCAC 2790375 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || ||||| || || ||||| || ||||| ||||||||| Sbjct 2790374 TTCTAAGGTGATTGTTTTGCCAGTGAGCGTTTTAACGAAGATCTGCATG 2790326 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || | ||| || ||| ||||||||| ||||| || ||||| Sbjct 2791010 GCCTCCCCGAAGGCGAAGTACTAAATGTAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 2790951 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | ||||| | || ||||| || || || ||||| || || ||||||||||||| ||| Sbjct 2790950 TAATGTGCGTCCATCCTCGAGTTGTTTCCCAGCGAAGATGAGTCGCTGTTGGTCCGGGGG 2790891 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCA 41813 || | ||||| | | ||| |||| | | ||| | | ||||| || ||| | Sbjct 2790890 AATTCCTTCCTTAT-CTTGAATTTTGACCTTTACGTTCTCGATCGTGTCCGACGCCTCGA 2790832 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 2790831 CTTCCAGAGTGATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 2790783 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||| || || || ||||||||| ||||| |||||||| Sbjct 2789641 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2789582 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||||||||| || || || | ||| || || | ||| Sbjct 2789581 AGAGTGCGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGATCTGGTGGA 2789522 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| | |||| ||||| | | || ||| | ||| || Sbjct 2789521 ATTCCCTCCTTGTCC-TGAATCTTTGCCTTCACGTTCTCGATGGTATCGGAAGCCTCGAC 2789463 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 |||| || || || || || || || ||||| |||| Sbjct 2789462 TTCCAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGA 2789425 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| ||| ||| | ||| ||||||||||| ||||| || Sbjct 2790781 CCTCCACGAAGTCGAAGAACCAAATGAAGCATTGACTCTTTCTGAATGTTGTAGTCTGAA 2790722 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG-CGGG 41754 || || || | || || | || || || ||||| || | | ||| ||||| | |||| Sbjct 2790721 AGCGTTCGACCATCCTCCAATTGTTTTCCAGCGAAGATTAACCTCTGCTGGTCTGGCGGG 2790662 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | || ||||| ||| ||| |||| |||| |||| | | ||||| | |||| Sbjct 2790661 ATCCCT-TCCTTATCC-TGAATTTTGGCTTTAACGTTTTCGATGGTGTCCGATGCTTCCA 2790604 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| |||||||| || ||||| || || || || ||||||||||| Sbjct 2790603 CCTCCAAGGTTATCGTCTTGCCCGTAAGGGTTTTGACAAAAATCTGCAT 2790555 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701 || ||||| | ||||| || || || ||||||||| ||||| || ||||| | || Sbjct 2789424 CGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAAAGTA 2789365 Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTC 41761 || |||| || || |||||||||||||| |||| | ||| || || | |||| | | Sbjct 2789364 CGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAACCTCTGCTGATCGGGTGGAATTCCC 2789305 Query 41762 TCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCAC 41820 ||||| | | ||| | || | | || | | ||||||| | ||| ||||| | Sbjct 2789304 TCCTTAT-CTTGAATCTTCACCTTTACATTTTCAATAGTGTCGGAAGCCTCGACCTCGAG 2789246 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 || || || || || |||| ||||| || |||||||||||||| || Sbjct 2789245 GGTAATGGTCTTCCCAGTCAATGTCTTGACAAAAATCTGCATGTTTTC 2789198 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 || ||||| ||| || |||||||| || || || | ||||| | || || | |||| Sbjct 2790073 TGAAGCGTTGACTCTTTTTGAATGTTGTAATCAGATAATGTGCGACCATCTTCTAACTGC 2790014 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 ||||||||||| |||| | ||||| || | ||||| | || |||||| ||| | || Sbjct 2790013 TTGCCGGCGAAGATCAACCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCC-TGAATCTT 2789955 Query 41780 TGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 || | |||| | | |||||| | ||||||||||| || || || || || || Sbjct 2789954 GGCCTTAACGTTTTCAATTGTGTCGGATGCCTCCACCTCCAATGTAATGGTCTTGCCTGT 2789895 Query 41839 CAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || || |||||||| Sbjct 2789894 AAGGGTCTTAACAAAGATCTGCAT 2789871 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || || |||||| || |||||||||||||| Sbjct 2789869 CCACCACGCAGACGCAGGACCAGGTGAAGGGTCGACTCCTTTTGGATGTTATAGTCGGAT 2789810 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || |||||||||||||| || || || | ||| ||||| | || Sbjct 2789809 AAAGTACGGCCATCCTCTAGCTGCTTGCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 2789750 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||| ||| || ||| | | | |||||| | ||| || Sbjct 2789749 ATTCCTTCCTTGTCTTGGATCTTCGCCTTTACATTCTCGATCGTGTCGGAAGCCTCGACT 2789690 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| || ||||||||||| Sbjct 2789689 TCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAAAATCTGCAT 2789643 >seq20 Length=2461668 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||||||||| || || || | | || || | |||||| || ||||| || Sbjct 1189125 TTCTGGATGTTATAGTCAGAAAGCGTCCTGCCATCTTCCAACTGCTTTCCAGCGAAGATG 1189066 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGA 41793 || ||||| || |||| |||| || |||||||||| || | || |||| ||| | Sbjct 1189065 AGACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCC-TGGATCTTAGCTTTGACGTTCTC 1189007 Query 41794 CACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | || ||| || ||||||||| | || || || || || || || ||||| ||||| Sbjct 1189006 GATGGTATCGGACGCCTCCACCTCGAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACGAA 1188947 Query 41854 AATCTGCATG 41863 ||||||||| Sbjct 1188946 GATCTGCATG 1188937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462298591043200