Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq9911 107 2e-18 seq22504 91.5 1e-13 >seq9911 Length=12084 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | || || || || || ||||| ||||| ||| |||||| | Sbjct 6211 AATGCAGATCTTTGTGAAGACTTTAACTGGTAAAACAATTACATTGGAAGTGGAACCTTC 6152 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | || || || || ||||||||| | ||| |||||| Sbjct 6151 AGACACCATCGAGAATGTAAAAGCTAAGATCCAGGACAAAGAAGGTATTCCCCCAGATCA 6092 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||| || | |||||||| ||||| ||| |||||||| || | |||| | |||||| Sbjct 6091 ACAGCGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGTCGCACTCTAT--CTGATTAC 6034 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| || || || ||||| |||||||| |||| ||||||| Sbjct 6033 AATATTCAGAAAGAGTCCACACTTCATTTGGTGTTAAGATTGAGAGGAGG 5984 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| || || || || || ||||| ||| |||||| || Sbjct 5034 ATGCAGATTTTTGTTAAAACTTTAACTGGTAAGACTATTACACTTGAAGTGGAACCAGCT 4975 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||| ||| || || ||||| | || |||||| Sbjct 4974 GATACCATAGAAAATGTGAAAGCAAAGATTCAAGACAAGGAAGGAATCCCTCCCGATCAA 4915 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | | || ||||| ||||| ||| |||||||| || | |||| | ||||||| Sbjct 4914 CAACGTTTGATATTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTAT--CAGATTACA 4857 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||| |||||||| ||||||||| |||| ||||| || ||||||| Sbjct 4856 ATATTCAAAAGGAATCAACTCTTCACCTGGTATTACGGTTGAGAGGAGG 4808 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| | || || | || || ||||| || || ||| ||||| || Sbjct 4350 ATGCAAATATTTGTTAAGACCCTTACTGGGAAAACTATCACATTGGAAGTAGAACCTTCA 4291 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | |||| |||||| |||||||||||| | || |||||| Sbjct 4290 GATACAATTGAAAACGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCAGATCAG 4231 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | | |||||||| || |||||| |||||||| |||| | | ||||||||| Sbjct 4230 CAGCGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGGCGAACTCTTTCAGATTACAAT 4171 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||||||||| || || |||| | || ||||| || || Sbjct 4170 ATTCAAAAGGAATCTACCCTACATTTGGTACTTCGCTTACGTGGGGG 4124 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| |||| ||||| || || || || ||||| ||| ||| || | Sbjct 5490 ATGCAGATATTCGTCAAGACATTAACTGGGAAGACGATTACTTTGGAAGTGGAGCCATCT 5431 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||||| |||||||||||| | || ||| ||| Sbjct 5430 GATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAA 5371 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | | |||||||| || |||||| |||||||| ||| | | ||||| || Sbjct 5370 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAAC 5311 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || || || || || || |||| |||||||| |||| || Sbjct 5310 ATCCAAAAAGAGTCGACCCTCCATTTGGTATTACGATTGAGAGGTGG 5264 >seq22504 Length=90246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | |||||| | || || ||||| || ||| ||| ||||| | Sbjct 25531 AATGCAAATTTTCGTGAAAACACTTACAGGGAAAACAATAACCCTCGAGGTTGAACCTTC 25590 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || ||| | | || | ||| |||||| || || |||||| | || ||||| Sbjct 25591 CGATACGATCGAAAATGTAAAGGCTAAAATTCAAGACAAGGAAGGTATCCCACCCGATCA 25650 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||| | ||||| || || || ||||| ||||||| || | |||| | ||||| Sbjct 25651 GCAACGTCTTATATTCGCTGGTAAACAGTTGGAAGACGGTCGTACTCTATCG--GATTAT 25708 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATT 29179 ||||| ||||||||||| ||| | ||| ||||||| || || Sbjct 25709 AATATCCAGAAGGAATCCACTTTGCACTTGGTGTTGCGTTT 25749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428198156790275