Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq22504 129 6e-25 seq9911 100 3e-16 seq22544 95.1 1e-14 >seq22504 Length=90246 Score = 129 bits (142), Expect = 6e-25 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 40675 GAAACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTC 40734 |||||||| | ||||||||| ||||| ||||| || || || ||||| || ||| || Sbjct 25521 GAAACGCTAC----AATGCAAATTTTCGTGAAAACACTTACAGGGAAAACAATAACCCTC 25576 Query 40735 GACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGC 40794 || || ||| | |||| | | ||| | |||| ||||||| ||||| || || Sbjct 25577 GAGGTTGAACCTTCCGATACGATCGAAAATGTAAAGGCTAAAATTCAAGACAAGGAAGGT 25636 Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 ||||| | || |||||||| || || | ||| || |||||| |||| |||| || || Sbjct 25637 ATCCCACCCGATCAGCAACGTCTTATATTCGCTGGTAAACAGTTGGAAGACGGTCGTACT 25696 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGC 40914 || || || || ||||||||||| |||| |||| | |||||||| |||||||| Sbjct 25697 CTATCGGATTATAATATCCAGAAGGAATCCACTTTGCACTTGGTGTTGCGTTTGAGGGGT 25756 Query 40915 GG 40916 || Sbjct 25757 GG 25758 >seq9911 Length=12084 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || |||||||| || || || ||||| || || | || || ||| | | Sbjct 4579 AATGCAAATCTTTGTAAAAACTCTTACTGGAAAAACAATTACATTAGAAGTGGAACCATC 4520 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | ||| ||||| | | |||||||| || || || | |||| Sbjct 4519 GGACACCATTGAAAACGTTAAAGCAAAAA-TCCAAGACAAAGAAGGTATACCTCCAGACC 4461 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| | || | || || ||||| |||| || | ||||| || || || | Sbjct 4460 AGCAACGTTTGATTTTTGCCGGGAAACAATTGGAGGATGGCCGCACGCTTTCAGATTATA 4401 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | ||||| || || | || ||||| |||| ||||| ||||| || || Sbjct 4400 ATATCCAAAAAGAATCTACACTGCACTTAGTCTTGCGATTGAGAGGAGG 4352 >seq22544 Length=59602 Score = 95.1 bits (104), Expect = 1e-14 Identities = 179/263 (68%), Gaps = 3/263 (1%) Strand=Plus/Minus Query 139373 GGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGCACGTCGGCC 139432 ||||| ||||| |||||| | ||||| |||||||| | |||||| |||| || ||| Sbjct 43582 GGCCTTCACGGATTCCACATTCACGAATTCGGCGATAACACCAACGGCTGCATTTCAGCC 43523 Query 139433 GGCGAGCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCAC 139492 |||| ||||||||||| | ||| ||||||| || || || || | | ||| Sbjct 43522 GGCGCCCACTTCAACCCTCACAGTAAGGATCACGGCGGACCAGAAGCAGACGTACGTCAC 43463 Query 139493 GTCGGCGACCTGGGCAACCTCGAGTCGGCGGGCCGCGACGCGCTCACCGAGGTGAGCCTG 139552 |||||||| |||| ||| |||| ||||| ||| | || || |||| | | Sbjct 43462 GTCGGCGATTTGGGGAACATCGA---AGCGGGAGACGATGGCATCGCCAAGGTTAAAATT 43406 Query 139553 ACGGACGGCGTCGTGTCCCTGTACGGTCCGCACAGCATCATCGGACGGAGTCTGGTCGTG 139612 || ||| | || ||| | || ||||||||||| | ||||| | |||||||| Sbjct 43405 TGCGATAACGTGATATCGCTGGAAGGAGCGCACAGCATCGTTGGACGTACCCTGGTCGTT 43346 Query 139613 CACACGGACAGGGACGATCTGGG 139635 ||| | ||| || ||||| || Sbjct 43345 CACGCAGACCCCGATGATCTCGG 43323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515049145462800