Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq9911 138 2e-27 seq22504 86.0 9e-12 >seq9911 Length=12084 Score = 138 bits (152), Expect = 2e-27 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCAT 146126 ||||||||||| ||||||| |||| || ||||| |||||||||||||||| | ||| | Sbjct 4141 TACCAAATGTAGGGTAGATTCCTTTTGA-ATATTGTAATCTGAAAGAGTTCGCCCATCTT 4199 Query 146127 CTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTT 146186 | ||||||||||| ||||| ||||| | |||||||| |||||||| ||||||||||| | Sbjct 4200 CCAATTGTTTTCCTGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCCT 4259 Query 146187 GNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTT 146246 | ||||||||| ||||||||| | |||||| |||| Sbjct 4260 GAATTTTAGCTTTAACGTTTTCAATTGTATCTGAAGGTTCTACTTCCAATGTGATAGTTT 4319 Query 146247 TACCTGTTAATGTTTTAATGAATATTTGCAT 146277 | || || | || |||| ||||||||||| Sbjct 4320 TCCCAGTAAGGGTCTTAACAAATATTTGCAT 4350 Score = 116 bits (128), Expect = 6e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||| ||||||||||||| ||| |||||||| || |||||||| | Sbjct 4578 TTCCTCCTCTTAATCTCAATACCAAATGTAGAGTGGATTCTTTCTGAATGTTATAATCAG 4637 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | ||| || || ||||| ||||||||||| || | || ||||| |||| Sbjct 4638 ATAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGAG 4697 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||||||||| ||||| Sbjct 4698 GTATTCCTTCTTTGTCTTG 4716 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | || || || || || | ||||||||||| ||||||||||||||| Sbjct 4352 CCTCCTCTCAATCGCAAGACTAAGTGCAGTGTAGATTCTTTTTGGATATTATAATCTGAA 4411 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || |||||||| || ||||||||||| | |||||| || ||||| Sbjct 4412 AGCGTGCGGCCATCCTCCAATTGTTTCCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGT 4471 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 4472 ATACCTTCTTTGTCTTG 4488 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || |||||||||||| | || || ||||| || |||||||| ||| Sbjct 5264 CCACCTCTCAATCGTAATACCAAATGGAGGGTCGACTCTTTTTGGATGTTATAATCAGAA 5323 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || |||||||| |||||||| ||||| | ||| || || || || Sbjct 5324 AGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGG 5383 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 5384 ATACCTTCTTTATCTTG 5400 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || | || |||||| ||||| | |||||||| || || |||||||||||| Sbjct 5036 CCACCCCTCAATCGTAATACTAAATGAAGGGTAGATTCCTTTTGGATGTTATAATCTGAA 5095 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| ||||||||||| ||||| || || | || ||| ||||| || ||| Sbjct 5096 AGGGTACGACCATCTTCTAATTGTTTACCAGCGAATATTAGTCGTTGTTGATCAGGTGGA 5155 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||||||||| || ||||| || ||| ||| Sbjct 5156 ATACCTTCTTTATCCTGGATCTTAGCTTTTACATTTTCAATGGTATCAGATGGTTCAACT 5215 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||| || || || ||||| ||||||| || |||||||| Sbjct 5216 TCTAAAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAAATTTGCAT 5262 >seq22504 Length=90246 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 |||||||| ||||| || |||||||| ||||||||||| || ||||| | | || Sbjct 21198 AATACCAAGTGTAAGGTGGATTCTTTCTGAATATTATAATCCGATAGAGTACGACCGTCT 21139 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || || ||||| ||||| || || | | ||||||||| || || || ||||| || ||| Sbjct 21138 TCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGGATACCTTCCTTGTCT 21079 Query 146186 TG 146187 || Sbjct 21078 TG 21077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743280989817600