Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13]
26,405 sequences; 423,765,647 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq9911 138 2e-27
seq22504 86.0 9e-12
>seq9911
Length=12084
Score = 138 bits (152), Expect = 2e-27
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 146068 TACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCAT 146126
||||||||||| ||||||| |||| || ||||| |||||||||||||||| | ||| |
Sbjct 4141 TACCAAATGTAGGGTAGATTCCTTTTGA-ATATTGTAATCTGAAAGAGTTCGCCCATCTT 4199
Query 146127 CTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTT 146186
| ||||||||||| ||||| ||||| | |||||||| |||||||| ||||||||||| |
Sbjct 4200 CCAATTGTTTTCCTGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCCT 4259
Query 146187 GNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTT 146246
| ||||||||| ||||||||| | |||||| ||||
Sbjct 4260 GAATTTTAGCTTTAACGTTTTCAATTGTATCTGAAGGTTCTACTTCCAATGTGATAGTTT 4319
Query 146247 TACCTGTTAATGTTTTAATGAATATTTGCAT 146277
| || || | || |||| |||||||||||
Sbjct 4320 TCCCAGTAAGGGTCTTAACAAATATTTGCAT 4350
Score = 116 bits (128), Expect = 6e-21
Identities = 109/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||| ||||| | ||| ||||||||||||| ||| |||||||| || |||||||| |
Sbjct 4578 TTCCTCCTCTTAATCTCAATACCAAATGTAGAGTGGATTCTTTCTGAATGTTATAATCAG 4637
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| | ||| | | ||| || || ||||| ||||||||||| || | || ||||| ||||
Sbjct 4638 ATAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGAG 4697
Query 146169 GAATTCCTTCTTTATCTTG 146187
| ||||||||||| |||||
Sbjct 4698 GTATTCCTTCTTTGTCTTG 4716
Score = 113 bits (124), Expect = 7e-20
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| ||||| | || || || || || | ||||||||||| |||||||||||||||
Sbjct 4352 CCTCCTCTCAATCGCAAGACTAAGTGCAGTGTAGATTCTTTTTGGATATTATAATCTGAA 4411
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || | || ||| || |||||||| || ||||||||||| | |||||| || |||||
Sbjct 4412 AGCGTGCGGCCATCCTCCAATTGTTTCCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGT 4471
Query 146171 ATTCCTTCTTTATCTTG 146187
|| |||||||| |||||
Sbjct 4472 ATACCTTCTTTGTCTTG 4488
Score = 113 bits (124), Expect = 7e-20
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | || |||||||||||| | || || ||||| || |||||||| |||
Sbjct 5264 CCACCTCTCAATCGTAATACCAAATGGAGGGTCGACTCTTTTTGGATGTTATAATCAGAA 5323
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
||||| | | ||| || |||||||| |||||||| ||||| | ||| || || || ||
Sbjct 5324 AGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGG 5383
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||||||||||||
Sbjct 5384 ATACCTTCTTTATCTTG 5400
Score = 111 bits (122), Expect = 2e-19
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| || | || |||||| ||||| | |||||||| || || ||||||||||||
Sbjct 5036 CCACCCCTCAATCGTAATACTAAATGAAGGGTAGATTCCTTTTGGATGTTATAATCTGAA 5095
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || | | ||| ||||||||||| ||||| || || | || ||| ||||| || |||
Sbjct 5096 AGGGTACGACCATCTTCTAATTGTTTACCAGCGAATATTAGTCGTTGTTGATCAGGTGGA 5155
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| ||||||||||| || ||||| || ||| |||
Sbjct 5156 ATACCTTCTTTATCCTGGATCTTAGCTTTTACATTTTCAATGGTATCAGATGGTTCAACT 5215
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||| ||||| || || || ||||| ||||||| || ||||||||
Sbjct 5216 TCTAAAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAAATTTGCAT 5262
>seq22504
Length=90246
Score = 86.0 bits (94), Expect = 9e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125
|||||||| ||||| || |||||||| ||||||||||| || ||||| | | ||
Sbjct 21198 AATACCAAGTGTAAGGTGGATTCTTTCTGAATATTATAATCCGATAGAGTACGACCGTCT 21139
Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185
|| || ||||| ||||| || || | | ||||||||| || || || ||||| || |||
Sbjct 21138 TCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGGATACCTTCCTTGTCT 21079
Query 146186 TG 146187
||
Sbjct 21078 TG 21077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743280989817600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |