Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq9911 109 4e-19 >seq9911 Length=12084 Score = 109 bits (120), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || || ||||| ||||| || |||||||| | || ||| | ||| Sbjct 5506 AAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTGTAGTCAGACAATGTACGGCCATC 5565 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||||||| ||||| || |||| | | |||||| || || | ||||||||| || Sbjct 5566 TTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTGTC 5625 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||||| |||| || || | | ||| || || ||||| ||| | || ||| Sbjct 5626 TTGAATTT-TTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAACTTCCAATGTAATGG 5684 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || ||||| |||||||||||||||||||| Sbjct 5685 TTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 5718 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || || ||||| ||||| || || ||||| | || |||| | ||| Sbjct 5770 AAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTATAGTCAGACAATGTTCGGCCATC 5829 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||||||| ||||| || |||| | | |||||| || || | ||||||||| || Sbjct 5830 TTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTGTC 5889 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||||| |||| || || | | ||| || || ||||| ||| | || ||| Sbjct 5890 TTGAATTT-TTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAACTTCCAATGTAATGG 5948 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || ||||| ||||| |||||||||||||| Sbjct 5949 TTTTTCCAGTCAAGGTTTTCACAAAAATTTGCAT 5982 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| |||||| |||||||| |||||||| ||||| || | | || || |||||| Sbjct 4825 TACCAGGTGAAGAGTTGATTCCTTTTGAATATTGTAATCTGATAGAGTGCGACCATCTTC 4884 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||| ||||| ||| | || | | ||||||||| || | |||||||| || Sbjct 4885 CAATTGCTTGCCAGCAAATATCAAACGTTGTTGATCGGGAGGGATTCCTTCCTTGTCTTG 4944 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||| | |||| || || | | | | || ||| | || || ||||| || || | | Sbjct 4945 AATCT-TTGCTTTCACATTTTCTATGGTATCAGCTGGTTCCACTTCAAGTGTAATAGTCT 5003 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || || ||||| |||||||| ||||| Sbjct 5004 TACCAGTTAAAGTTTTAACAAAAATCTGCAT 5034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379221922951725