Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1220 351 9e-92 >seq1220 Length=9943 Score = 351 bits (388), Expect = 9e-92 Identities = 640/924 (69%), Gaps = 16/924 (2%) Strand=Plus/Plus Query 13570 TAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCA 13629 ||||||| | |||||| ||||| | |||| |||||||||| |||||||||||||| ||| Sbjct 7157 TAACGCCTACTTTTTGGTATTCTCCAACTTTTTTTTCAAAAAAGTTAGTTTTACCCTCCG 7216 Query 13630 GTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTA 13689 ||||| | | |||||||||||||||||| |||| || | ||||| |||||||||| Sbjct 7217 TGGATATGATATTCATAAAATCAAATGGATTGCTTGAATTATAAACTTTTTCACAACCTA 7276 Query 13690 GTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCA 13749 |||| | |||||| ||||| | ||| |||||||| ||| ||| | | || |||| Sbjct 7277 GTTCGTTCAATAATCTGTCAGCGACAAATTCAATATACTGACTCATAGATTTGCAGTTCA 7336 Query 13750 TACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCT 13809 | ||||||| | ||||| | || ||| | ||| |||| || || || || | Sbjct 7337 TTCCTATTAAGCTAACAGGCAAGGCATCGGTAAGAAACTCTTGCTCGATTTCAACCGCGT 7396 Query 13810 CTTTTATAATAATTGTAATAATCTC-ATTAGAAGGAGGATATTTTAGATGTTTA-AAAAT 13867 | |||||| | | | || ||| | | | | || || | | | ||||| Sbjct 7397 CGCAAATAATA--TCGACGATTCGAGATTTCGACG--GTTTTTGTACAATATAAGAAAAT 7452 Query 13868 --TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13925 ||| || ||||| ||| |||| | || ||||| | || | ||| || || || Sbjct 7453 AATAAGCAAGCAAATTCATAATGCAATCCTTCATCGCGGGATATTAATTCATTGGAGAAA 7512 Query 13926 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAA 13985 |||| || ||||| | ||||| ||||| |||||||| |||| |||||| ||||| Sbjct 7513 GTTAGACCCGGCATAAGTCCTCTCTTTTTCAACCAAAAAATTGAAGCAAAGCTTCCGGAG 7572 Query 13986 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTG 14045 ||||| ||||| || |||||||| || |||| ||| || || || || | || | ||| Sbjct 7573 AAGAAAATTCCTTCGACTGCAGCGAAAGCTACTAAACGCTCACCGAAGGTCGCCTCTTTA 7632 Query 14046 TTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 | ||||||| ||||| | || |||||| | || | |||||| || Sbjct 7633 CTGCTGATCCATTGCAGGGCCCAGTTAGCTTTTTTGGCTACGCAAGGTAGTGTTTCTATC 7692 Query 14106 GCATTAAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGC 14163 ||||| |||||| |||| |||||||| | | ||| || | || |||||||| | || Sbjct 7693 GCATTGAATAAAAATTCTTTCTCTTTCGGGTCGCTGATAT--ACGTTTCAATAAGCATGC 7750 Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTT 14223 | |||||||| || || || || || || || |||||||| ||||| || | |||| Sbjct 7751 TGTACATTTCGCTATGAATATTCTCAATTGCAATTTGAAAACCGTAAAAACACCGGGCTT 7810 Query 14224 CCGACCATTGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 | | ||| || || || ||||| | ||| ||| |||||||||||| || ||||| Sbjct 7811 CAGTTACTTGAACCTCTTGACTAAAA-CGTTCCACCAGATTTTCATTAACGATTCCATCG 7869 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14342 || || ||||||||||| | || ||| ||||| | | ||| |||| | | | ||| Sbjct 7870 GATGCAGCGAAAAATGCCAAGACGTATTTGATAAAATGTCTCTCGTCATCGGTTAATTTA 7929 Query 14343 TTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14402 ||||||| || ||| |||| | ||||||||| || ||||||||| || | Sbjct 7930 TTCCAATGATCTATATCTCTAGATAAATCTACTTCTTCGGTTGTCCAAAACGAGGCTTCG 7989 Query 14403 GCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-TCGA 14461 |||| ||| || | |||| || || |||| ||| || ||||| ||||||| | Sbjct 7990 GCTTGTTTGTATTTAGCCCAAATATCGGGATATTCTATTGGGAAAACAACAAATCGTTTG 8049 Query 14462 AGATGTTTCTTTAAGAATTGGTTC 14485 ||| |||||||||||| |||||| Sbjct 8050 GGAT-TTTCTTTAAGAAGTGGTTC 8072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479569659777000