Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1220 360 2e-94 >seq1220 Length=9943 Score = 360 bits (398), Expect = 2e-94 Identities = 642/924 (69%), Gaps = 16/924 (2%) Strand=Plus/Plus Query 13358 TAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCA 13417 ||||||| | |||||| ||||| | |||| ||||||||||||||||||||||||| ||| Sbjct 7157 TAACGCCTACTTTTTGGTATTCTCCAACTTTTTTTTCAAAAAAGTTAGTTTTACCCTCCG 7216 Query 13418 GTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTA 13477 ||||| | | ||||||||| |||||||| |||| || | ||||| |||||||||| Sbjct 7217 TGGATATGATATTCATAAAATCAAATGGATTGCTTGAATTATAAACTTTTTCACAACCTA 7276 Query 13478 GTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCA 13537 |||| |||||||| ||||| | ||| |||||||| ||| ||| | | || |||| Sbjct 7277 GTTCGTTCAATAATCTGTCAGCGACAAATTCAATATACTGACTCATAGATTTGCAGTTCA 7336 Query 13538 TACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCT 13597 | ||||||| | ||||| | || || | ||| |||| || || || || | Sbjct 7337 TTCCTATTAAGCTAACAGGCAAGGCATCGGTAAGAAACTCTTGCTCGATTTCAACCGCGT 7396 Query 13598 CGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTT-TAGATGTTTA-AAAAT 13655 || |||||| | | || || | || | | ||| || | | | ||||| Sbjct 7397 CGCAAATAATA---TCGACGAT-TCGAGATTTCGACGGTTTTTGTACAATATAAGAAAAT 7452 Query 13656 --TAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAAT 13713 ||| || ||||| ||| |||| | || ||||| | || | ||| || || || Sbjct 7453 AATAAGCAAGCAAATTCATAATGCAATCCTTCATCGCGGGATATTAATTCATTGGAGAAA 7512 Query 13714 GTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAA 13773 |||| || ||||| | ||||| ||||| |||||||| |||| ||| || |||||| Sbjct 7513 GTTAGACCCGGCATAAGTCCTCTCTTTTTCAACCAAAAAATTGAAGCAAAGCTTCCGGAG 7572 Query 13774 AAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTG 13833 ||||| ||||| || |||||||| || |||| || || || || || | || | ||| Sbjct 7573 AAGAAAATTCCTTCGACTGCAGCGAAAGCTACTAAACGCTCACCGAAGGTCGCCTCTTTA 7632 Query 13834 TTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATT 13893 | ||||||| ||||| | || |||||| | || | |||||| || Sbjct 7633 CTGCTGATCCATTGCAGGGCCCAGTTAGCTTTTTTGGCTACGCAAGGTAGTGTTTCTATC 7692 Query 13894 GCATTGAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGC 13951 |||||||||||| ||| |||||||| | | ||| || | || |||||||| | || Sbjct 7693 GCATTGAATAAAAATTCTTTCTCTTTCGGGTCGCTGATAT--ACGTTTCAATAAGCATGC 7750 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011 | |||||||| || || || || || || || |||||||| |||||||| | |||| Sbjct 7751 TGTACATTTCGCTATGAATATTCTCAATTGCAATTTGAAAACCGTAAAAACACCGGGCTT 7810 Query 14012 CTGACCATTGTACCTCC-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCA 14070 | | ||| ||||| || ||||| | ||| ||| ||||||||||| || ||||| Sbjct 7811 CAGTTACTTGAACCTCTTGACTAAAA-CGTTCCACCAGATTTTCATTAACGATTCCATCG 7869 Query 14071 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14130 || || ||||||||||| | || ||| ||||| | | ||| |||| | | | ||| Sbjct 7870 GATGCAGCGAAAAATGCCAAGACGTATTTGATAAAATGTCTCTCGTCATCGGTTAATTTA 7929 Query 14131 TTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14190 ||||||| ||| ||| |||| | ||||||||| || ||||||||| || | Sbjct 7930 TTCCAATGATCTATATCTCTAGATAAATCTACTTCTTCGGTTGTCCAAAACGAGGCTTCG 7989 Query 14191 GCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC-TTGA 14249 |||| ||| || | |||| || || |||| ||| || ||||| ||||||| || Sbjct 7990 GCTTGTTTGTATTTAGCCCAAATATCGGGATATTCTATTGGGAAAACAACAAATCGTTTG 8049 Query 14250 AGATGTTTCTTTAAGAATTGGCTC 14273 ||| |||||||||||| ||| || Sbjct 8050 GGAT-TTTCTTTAAGAAGTGGTTC 8072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478430835784200