Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13]
26,405 sequences; 423,765,647 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq9911 132 4e-26
seq22504 86.0 5e-12
>seq9911
Length=12084
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| | || ||||||||||||||| | ||| ||| || || | ||||||||| ||
Sbjct 5984 CCTCCTCTCAATCTTAACACCAAATGAAGTGTGGACTCTTTCTGAATATTGTAATCAGAT 6043
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || || | || |||||||| ||||||||||| ||||||||||||||||| | ||
Sbjct 6044 AGAGTGCGACCATCTTCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGATCTGGGGGA 6103
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||||||| || |||| |||| || | | | ||||| || || ||
Sbjct 6104 ATACCTTCTTTGTCCTGGATCTTAGCTTTTACATTCTCGATGGTGTCTGAAGGTTCCACT 6163
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| | || || ||||| || |||| ||| |||||||| || ||||||
Sbjct 6164 TCCAATGTAATTGTTTTACCAGTTAAAGTCTTCACAAAGATCTGCATT 6211
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| | | ||| || |||||||| | |||| || || || | || ||||| ||
Sbjct 4580 CCTCCTCTTAATCTCAATACCAAATGTAGAGTGGATTCTTTCTGAATGTTATAATCAGAT 4639
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
|| ||||| | || ||||| ||||| || |||||||| || ||||||||||| | ||
Sbjct 4640 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGAGGT 4699
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| |||||||| || |||| ||||| | | | | || || || || ||
Sbjct 4700 ATTCCTTCTTTGTCTTGGATCTTAGCTTTGGCATTCTCGATAGTATCAGAAGGTTCCACT 4759
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|| | || || || ||||| || ||||||||||||||||||||||||
Sbjct 4760 TCCAATGTAATGGTCTTTCCCGTAAGAGTTTTCACAAAAATTTGCATT 4807
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
||||||||||| ||| |||||||| | |||||| || ||||||||||| | || ||
Sbjct 5509 CACCAAATGGAGAGTAGATTCCTTTTGGATATTGTAGTCAGACAATGTACGGCCATCTTC 5568
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
|||||| ||||| || || || || || ||||| || | || | ||||| || ||
Sbjct 5569 CAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTG 5628
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|| |||| || | ||| ||| ||| | ||| || || | || || |||||
Sbjct 5629 AATTTTTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAACTTCCAATGTAATGGTTTT 5688
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||| || | ||||| ||||||||||||||
Sbjct 5689 TCCAGTCAAGGTTTTTACAAAAATTTGCAT 5718
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
||||||||||| ||| |||||||| | ||| || || |||||||| || | || ||
Sbjct 5773 CACCAAATGGAGAGTAGATTCCTTTTGGATATTATAGTCAGACAATGTTCGGCCATCTTC 5832
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
|||||| ||||| || || || || || ||||| || | || | ||||| || ||
Sbjct 5833 CAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTG 5892
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|| |||| || | ||| ||| ||| | ||| || || | || || |||||
Sbjct 5893 AATTTTTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAACTTCCAATGTAATGGTTTT 5952
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||| || | ||||||||||||||||||||
Sbjct 5953 TCCAGTCAAGGTTTTCACAAAAATTTGCAT 5982
Score = 98.7 bits (108), Expect = 8e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978
|| ||||| | ||| ||||| || | || || | || ||||||||||| |||||||||
Sbjct 4388 TCTTTTTGGATATTATAATCTGAAAGCGTGCGGCCATCCTCCAATTGTTTCCCGGCAAAA 4447
Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038
||||| || || || || | || | ||||||||| || ||| |||| || |
Sbjct 4448 ATCAAACGTTGCTGGTCTGGAGGTATACCTTCTTTGTCTTGGATTTTTGCTTTAACGTTT 4507
Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098
||| ||||| | || || |||| || || |||||||| || |||||||| |||
Sbjct 4508 TCAATGGTGTCCGATGGTTCCACTTCTAATGTAATTGTTTTTCCAGTAAGAGTTTTTACA 4567
Query 43099 AAAATTTGCATT 43110
|| |||||||||
Sbjct 4568 AAGATTTGCATT 4579
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960
|||||||| | || |||||||| | ||||||||| || | || || | || |||
Sbjct 4142 ACCAAATGTAGGGTAGATTCCTTTTGAATATTGTAATCTGAAAGAGTTCGCCCATCTTCC 4201
Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020
|||||||| || ||||| ||||| ||||| ||||| | || | ||||||||| || |||
Sbjct 4202 AATTGTTTTCCTGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATC-CTG 4260
Query 43021 -ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079
|| |||| || | ||| ||| || || || || || | || ||||||||
Sbjct 4261 AATTTTAGCTTTAACGTTTTCAATTGTATCTGAAGGTTCTACTTCCAATGTGATAGTTTT 4320
Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|| || || || || ||||| ||||||||
Sbjct 4321 CCCAGTAAGGGTCTTAACAAATATTTGCAT 4350
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| || | || || ||| || ||||| | || |||||||| | || ||||| ||
Sbjct 5036 CCACCCCTCAATCGTAATACTAAATGAAGGGTAGATTCCTTTTGGATGTTATAATCTGAA 5095
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| ||||| | || || |||||||| || || || || | ||| |||||||| | ||
Sbjct 5096 AGGGTACGACCATCTTCTAATTGTTTACCAGCGAATATTAGTCGTTGTTGATCAGGTGGA 5155
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||||||| || |||| |||| || | ||| || || | || ||
Sbjct 5156 ATACCTTCTTTATCCTGGATCTTAGCTTTTACATTTTCAATGGTATCAGATGGTTCAACT 5215
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| || || || ||||| |||| |||||| ||||||||||||||
Sbjct 5216 TCTAAAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAAATTTGCAT 5262
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
|| || | || || ||| |||||||||| || ||| ||||| | || ||||| ||
Sbjct 5264 CCACCTCTCAATCGTAATACCAAATGGAGGGTCGACTCTTTTTGGATGTTATAATCAGAA 5323
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| |||||| | || ||||||||||| || ||||| ||||| || ||||| || | ||
Sbjct 5324 AGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGG 5383
Query 43003 ACACCTTCTTTTTC 43016
| ||||||||| ||
Sbjct 5384 ATACCTTCTTTATC 5397
>seq22504
Length=90246
Score = 86.0 bits (94), Expect = 5e-12
Identities = 150/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957
|||||||| || | |||| ||||| || | ||| ||||| || | ||||| ||||
Sbjct 25743 AACACCAAGTGCAAAGTGGATTCCTTCTGGATATTATAATCCGATAGAGTACGACCGTCT 25684
Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017
||||| ||||| || || || || | || || ||||||| || | |||||| || ||
Sbjct 25683 TCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGGATACCTTCCTTGTCT 25624
Query 43018 CTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAG 43075
||| | | |||| | | | | | || ||| || || || || | ||||| |
Sbjct 25623 -TGAATTTTAGCCTTTACATTTTCGATC-GTATCGGAAGGTTCAACCTCGAGGGTTATTG 25566
Query 43076 TTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
|||| || || || |||||||| ||||||||||||
Sbjct 25565 TTTTCCCTGTAAGTGTTTTCACGAAAATTTGCATT 25531
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381246871091490
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |