Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq9911 131 2e-25 seq9764 116 4e-21 seq22504 104 2e-17 >seq9911 Length=12084 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || ||||| ||||| || | ||||||||||||||| || || ||||| Sbjct 4352 CCTCCTCTCAATCGCAAGACTAAGTGCAGTGTAGATTCTTTTTGGATATTATAATCTGAA 4411 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| || || | |||||| || ||| | |||| ||||||||| || |||||| Sbjct 4412 AGCGTGCGGCCATCCTCCAATTGTTTCCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGT 4471 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| ||| | | ||| | ||||||| ||||| ||| Sbjct 4472 ATACCTTCTTTGTCTTGGATTTTTGCTTTAACGTTTTCAATGGTGTCCGATGGTTCCACT 4531 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | |||||||| || |||||||| Sbjct 4532 TCTAATGTAATTGTTTTTCCAGTAAGAGTTTTTACAAAGATTTGCAT 4578 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || || || || ||||| | || || |||||||| ||||| ||||| Sbjct 5264 CCACCTCTCAATCGTAATACCAAATGGAGGGTCGACTCTTTTTGGATGTTATAATCAGAA 5323 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||||||||||||| |||||| |||||| || || || || Sbjct 5324 AGAGTACGTCCA-TCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGG 5382 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || |||||||| || ||||||| ||||| | ||| | || || | || || || Sbjct 5383 GATACCTTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCAGATGGCTCCAC 5442 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | |||||| || || ||||| || |||||||| |||||| Sbjct 5443 TTCCAAAGTAATCGTCTTCCCAGTTAATGTCTTGACGAATATCTGCATA 5491 Score = 116 bits (128), Expect = 4e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 ||||| || ||||| || | || ||||| | |||||||| ||||| || |||||||| Sbjct 4121 TGGCCCCCACGTAAGCGAAGTACCAAATGTAGGGTAGATTCCTTTTGAATATTGTAATCT 4180 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 | || | | ||||| | |||||| || ||| |||||| ||| |||||||| ||| Sbjct 4181 GAAAGAGTTCGCCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGCTGCTGATCTGGA 4240 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || |||||||| || |||||| ||| | | ||| | || || | |||||| Sbjct 4241 GGAATACCTTCTTTATCCTGAATTTTAGCTTTAACGTTTTCAATTGTATCTGAAGGTTCT 4300 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||||| | || | || || || || | || || || |||||||||||| || Sbjct 4301 ACTTCCAATGTGATAGTTTTCCCAGTAAGGGTCTTAACAAATATTTGCATACCT 4354 Score = 113 bits (124), Expect = 5e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || || || || | |||| || ||||| ||||| || |||||||| | Sbjct 4808 CCTCCTCTCAACCGTAATACCAGGTGAAGAGTTGATTCCTTTTGAATATTGTAATC--TG 4865 Query 143018 ATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | | ||| ||||| | ||| || |||||| | |||| |||||| |||||||||| Sbjct 4866 ATAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAATATCAAACGTTGTTGATCGGGAG 4925 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| ||| ||| ||| | | ||| | || || | ||||| | Sbjct 4926 GGATTCCTTCCTTGTCTTGAATCTTTGCTTTCACATTTTCTATGGTATCAGCTGGTTCCA 4985 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||||| || | ||||| || || || ||||| || || || |||||| Sbjct 4986 CTTCAAGTGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATCTGCATA 5035 Score = 109 bits (120), Expect = 6e-19 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 || || || |||||||||| |||||||| ||||| ||||| ||||| | | | | | Sbjct 5045 AATCGTAATACTAAATGAAGGGTAGATTCCTTTTGGATGTTATAATC--TGAAAGGGTAC 5102 Query 143027 GAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTT 143084 || ||||| | |||||||||||| | || || ||||| ||||| || || || |||| Sbjct 5103 GACCATCTTCTAATTGTTTACCAGCGAATATTAGTCGTTGTTGATCAGGTGGAATACCTT 5162 Query 143085 CTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAG 143144 |||| || || || ||||| | ||| | || || | ||||| ||||| | || Sbjct 5163 CTTTATCCTGGATCTTAGCTTTTACATTTTCAATGGTATCAGATGGTTCAACTTCTAAAG 5222 Query 143145 TCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | | ||||| || || || ||||| || || ||||||||| Sbjct 5223 TGATGGTCTTTCCAGTTAAAGTTTTAACAAAAATTTGCATA 5263 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||| || ||||| | || |||||||| || ||||| ||||| Sbjct 4580 CCTCCTCTTAATCTCAATACCAAATGTAGAGTGGATTCTTTCTGAATGTTATAATCAGAT 4639 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| | |||||||||||| | || | ||| || ||||| |||||| Sbjct 4640 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGAGGT 4699 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| | | || | ||| || | || | || || | ||||| || Sbjct 4700 ATTCCTTCTTTGTC-TTGGATCTTAGCTTTGGCATTCTCGATAGTATCAGAAGGTTCCAC 4758 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | ||||| || || | ||||| || || |||||||| Sbjct 4759 TTCCAATGTAATGGTCTTTCCCGTAAGAGTTTTCACAAAAATTTGCAT 4806 >seq9764 Length=88291 Score = 116 bits (128), Expect = 4e-21 Identities = 132/173 (76%), Gaps = 8/173 (5%) Strand=Plus/Plus Query 157047 TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTC---GGGCGCGCAATATT 157103 |||| ||||||||||||||||||||||| || ||| ||||||| || || ||| | Sbjct 25326 TATTCACGGCAATCGACGCTAGATTACAAACTGCAATTTCGTCTTTGGACG---TATACT 25382 Query 157104 GTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTT 157162 ||| || || | || || ||||| | ||| ||| ||| || | || ||| |||||| Sbjct 25383 CTACGATCTCGGTGCATAAGTTGCTACTTTTGATCGTTCC-CAGGTTCTGTTGGTTGCTT 25441 Query 157163 TTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTG 157215 || || ||||||||||||||||| | |||||| || || |||||||| |||| Sbjct 25442 TTACGATTGCAAGCGTCCTTGTAGAGCATGTAAGGGGTACCGGTTTCCACTTG 25494 >seq22504 Length=90246 Score = 104 bits (114), Expect = 2e-17 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 |||||||| || || || | || ||||| || || || || ||||| || | | | Sbjct 25749 AAACGCAACACCAAGTGCAAAGTGGATTCCTTCTGGATATTATAATCCG--ATAGAGTAC 25692 Query 143027 GA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTT 143084 || |||||| | ||||||||||| | || ||||||||||||||||| || || |||| Sbjct 25691 GACCGTCTTCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGGATACCTT 25632 Query 143085 CTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAG 143144 | ||||| |||||| |||| | ||| | ||| || | ||||| || || | | Sbjct 25631 CCTTGTCTTGAATTTTAGCCTTTACATTTTCGATCGTATCGGAAGGTTCAACCTCGAGGG 25572 Query 143145 TCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | | || || || || | |||||| ||||| |||||||| Sbjct 25571 TTATTGTTTTCCCTGTAAGTGTTTTCACGAAAATTTGCAT 25532 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| |||||||| || || || | || |||||||| || || || ||||| Sbjct 21213 CCGCCTCTCAAACGCAATACCAAGTGTAAGGTGGATTCTTTCTGAATATTATAATCCG-- 21156 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || | | ||| |||||| | ||||||||||| | || ||||||||||||||||| | Sbjct 21155 ATAGAGTACGACCGTCTTCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTG 21096 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| |||||| |||| | ||| | ||| || | ||||| | Sbjct 21095 GGATACCTTCCTTGTCTTGAATTTTAGCCTTTACATTTTCGATCGTATCGGAAGGTTCAA 21036 Query 143136 CTTC 143139 | || Sbjct 21035 CCTC 21032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506847053559600