Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13]
26,405 sequences; 423,765,647 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq9911 158 9e-34
seq22504 134 1e-26
>seq9911
Length=12084
Score = 158 bits (174), Expect = 9e-34
Identities = 174/229 (76%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| ||||||| ||| |||||||||||||| || || ||||| ||||| |||||
Sbjct 5036 CCACCCCTCAATCGTAATACTAAATGAAGGGTAGATTCCTTTTGGATGTTATAATCTGAA 5095
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | |||||||||||||| |||||| |||| | |||||||| || ||||
Sbjct 5096 AGGGTACGACCATCTTCTAATTGTTTACCAGCGAATATTAGTCGTTGTTGATCAGGTGGA 5155
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| |||||||| || || || ||| |||||| |||| |||||||| ||| ||
Sbjct 5156 ATACCTTCTTTATCCTGGATCTTAGCT-TTTACATTTTCAATGGTATCAGATGGTTCAAC 5214
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
||||| || ||||| || || || | |||||| |||||||||||||||
Sbjct 5215 TTCTAAAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAAATTTGCATA 5263
Score = 152 bits (168), Expect = 4e-32
Identities = 175/230 (76%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| |||||||| | ||| || | ||||| || || || ||||| || |||||||| |
Sbjct 4808 CCTCCTCTCAACCGTAATACCAGGTGAAGAGTTGATTCCTTTTGAATATTGTAATCTGAT 4867
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | ||||| ||||| |||||||| |||||||||||||||| ||| ||
Sbjct 4868 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAATATCAAACGTTGTTGATCGGGAGGG 4927
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATC-GCTATTTTCTA 15314
|||||||| ||||| ||| |||||| || ||| ||||||||||||| ||| ||| |
Sbjct 4928 ATTCCTTCCTTGTCTTGAATCTTTGCT-TTCACATTTTCTATGGTATCAGCT-GGTTCCA 4985
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
| || | ||||| || ||||| || | |||||| |||||||| ||||||
Sbjct 4986 CTTCAAGTGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATCTGCATA 5035
Score = 140 bits (154), Expect = 2e-28
Identities = 177/241 (73%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| |||||||||||||| || |||||||| ||||| ||||| || || |||||||| |
Sbjct 5984 CCTCCTCTCAATCTTAACACCAAATGAAGTGTGGACTCTTTCTGAATATTGTAATCAGAT 6043
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | ||||| ||||| ||||| || | ||||| || ||||| || |||
Sbjct 6044 AGAGTGCGACCATCTTCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGATCTGGGGGA 6103
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| ||||||||||| || || ||| |||||| | || ||||| || | ||| ||
Sbjct 6104 ATACCTTCTTTGTCCTGGATCTTAGCT-TTTACATTCTCGATGGTGTCTGAAGGTTCCAC 6162
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375
|| || ||||| |||||||| || | ||| || ||||| || ||||| | ||| | ||
Sbjct 6163 TTCCAATGTAATTGTTTTACCAGTTAAAGTCTTCACAAAGATCTGCATTCTAGAAGAAAA 6222
Query 15376 A 15376
|
Sbjct 6223 A 6223
Score = 136 bits (150), Expect = 3e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||||| ||| || ||||| ||||| || |||||||| ||||| |||||
Sbjct 5264 CCACCTCTCAATCGTAATACCAAATGGAGGGTCGACTCTTTTTGGATGTTATAATCAGAA 5323
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | | ||||| |||||||| ||||| | ||||||||||||||||| |||
Sbjct 5324 AGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGG 5383
Query 15257 ATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| |||||||| || || ||||||| |||||| |||| || ||||| || ||
Sbjct 5384 ATACCTTCTTTATCTTGAATTTTTGCT-TTTACATTTTCAATAGTATCAGATGGCTCCAC 5442
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || ||||| || || || || | || || || || || ||||||
Sbjct 5443 TTCCAAAGTAATCGTCTTCCCAGTTAATGTCTTGACGAATATCTGCATA 5491
Score = 134 bits (148), Expect = 1e-26
Identities = 171/231 (74%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| || | | || ||||| || || || || ||||| || ||||| ||
Sbjct 5492 CCACCTCTTAAACGAAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTGTAGTCAG-- 5549
Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
| ||| || | ||||| ||||| ||||||||| | || |||||||||||||| ||
Sbjct 5550 ACAATGTACGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTG 5609
Query 15255 GAATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313
| || ||||| ||||| || ||||||| ||||| |||| || |||||| ||
Sbjct 5610 GGATGCCTTCCTTGTCTTGAATTTTTGCT-TTTACGTTTTCAATTGTATCGGATGGCTCA 5668
Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || ||||||||||| || |||| |||||||||||||||||||||
Sbjct 5669 ACTTCCAATGTAATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCATA 5719
Score = 129 bits (142), Expect = 4e-25
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| |||||||||| || ||||| || || || || |||||||| || || |||||
Sbjct 4352 CCTCCTCTCAATCGCAAGACTAAGTGCAGTGTAGATTCTTTTTGGATATTATAATCTGAA 4411
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | || || |||||||| || || | ||||||||||| ||||| ||
Sbjct 4412 AGCGTGCGGCCATCCTCCAATTGTTTCCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGT 4471
Query 15257 ATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTA 15314
|| ||||||||||| | ||||||| || || |||| ||||| || | || ||| |
Sbjct 4472 ATACCTTCTTTGTCTTGGATTTTTGCT-TTAACGTTTTCAATGGTGTC-CGATGGTTCCA 4529
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| ||||| ||||| ||||| || || |||||||||||||| ||||||||
Sbjct 4530 CTTCTAATGTAATTGTTTTTCCAGTAAGAGTTTTTACAAAGATTTGCAT 4578
Score = 129 bits (142), Expect = 4e-25
Identities = 170/231 (74%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|||||||| || | | || ||||| || || || || ||||| || || || ||
Sbjct 5756 CCACCTCTTAAACGAAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTATAGTCAG-- 5813
Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
| ||| ||| | ||||| ||||| ||||||||| | || |||||||||||||| ||
Sbjct 5814 ACAATGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTG 5873
Query 15255 GAATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313
| || ||||| ||||| || ||||||| ||||| |||| || |||||| ||
Sbjct 5874 GGATGCCTTCCTTGTCTTGAATTTTTGCT-TTTACGTTTTCAATTGTATCGGATGGCTCA 5932
Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || || ||||||||||| || |||| ||||| |||||||||||||||
Sbjct 5933 ACTTCCAATGTAATGGTTTTTCCAGTCAAGGTTTTCACAAAAATTTGCATA 5983
Score = 125 bits (138), Expect = 5e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| ||||| ||||| || || ||||| || ||||| ||||| || ||||| ||||| |
Sbjct 4580 CCTCCTCTTAATCTCAATACCAAATGTAGAGTGGATTCTTTCTGAATGTTATAATCAGAT 4639
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
| | | | | ||||| || ||||| ||||| | || ||||| ||||| || ||
Sbjct 4640 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGAGGT 4699
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|||||||||||||| || || ||| || || | || || ||||| | ||| ||
Sbjct 4700 ATTCCTTCTTTGTCTTGGATCTTAGCT-TTGGCATTCTCGATAGTATCAGAAGGTTCCAC 4758
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || |||||||| || || || |||||||| ||||||||||||||
Sbjct 4759 TTCCAATGTAATGGTCTTTCCCGTAAGAGTTTTCACAAAAATTTGCAT 4806
>seq22504
Length=90246
Score = 134 bits (148), Expect = 1e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||| ||||| | || || || || | ||||| || || || || || ||||| |
Sbjct 25758 CCACCCCTCAAACGCAACACCAAGTGCAAAGTGGATTCCTTCTGGATATTATAATCCGAT 25699
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
||| | | ||||||| || ||||| |||||| |||| | |||||| || ||| |||
Sbjct 25698 AGAGTACGACCGTCTTCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGG 25639
Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316
|| ||||| ||||| |||||| ||||||| |||| || |||||| | ||| ||
Sbjct 25638 ATACCTTCCTTGTCTTGAATTTTAGCCTTTACATTTTCGATCGTATCGGAAGGTTCAACC 25579
Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | ||| || ||||| ||||| || ||||| || |||||||||||
Sbjct 25578 TCGAGGGTTATTGTTTTCCCTGTAAGTGTTTTCACGAAAATTTGCAT 25532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362062646772105
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |