Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9911 158 9e-34 seq22504 134 1e-26 >seq9911 Length=12084 Score = 158 bits (174), Expect = 9e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||||| ||| |||||||||||||| || || ||||| ||||| ||||| Sbjct 5036 CCACCCCTCAATCGTAATACTAAATGAAGGGTAGATTCCTTTTGGATGTTATAATCTGAA 5095 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||||||||||||| |||||| |||| | |||||||| || |||| Sbjct 5096 AGGGTACGACCATCTTCTAATTGTTTACCAGCGAATATTAGTCGTTGTTGATCAGGTGGA 5155 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || || || ||| |||||| |||| |||||||| ||| || Sbjct 5156 ATACCTTCTTTATCCTGGATCTTAGCT-TTTACATTTTCAATGGTATCAGATGGTTCAAC 5214 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| || || || | |||||| ||||||||||||||| Sbjct 5215 TTCTAAAGTGATGGTCTTTCCAGTTAAAGTTTTAACAAAAATTTGCATA 5263 Score = 152 bits (168), Expect = 4e-32 Identities = 175/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | ||| || | ||||| || || || ||||| || |||||||| | Sbjct 4808 CCTCCTCTCAACCGTAATACCAGGTGAAGAGTTGATTCCTTTTGAATATTGTAATCTGAT 4867 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| ||||| |||||||| |||||||||||||||| ||| || Sbjct 4868 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAATATCAAACGTTGTTGATCGGGAGGG 4927 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATC-GCTATTTTCTA 15314 |||||||| ||||| ||| |||||| || ||| ||||||||||||| ||| ||| | Sbjct 4928 ATTCCTTCCTTGTCTTGAATCTTTGCT-TTCACATTTTCTATGGTATCAGCT-GGTTCCA 4985 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | ||||| || ||||| || | |||||| |||||||| |||||| Sbjct 4986 CTTCAAGTGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATCTGCATA 5035 Score = 140 bits (154), Expect = 2e-28 Identities = 177/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||||||| || |||||||| ||||| ||||| || || |||||||| | Sbjct 5984 CCTCCTCTCAATCTTAACACCAAATGAAGTGTGGACTCTTTCTGAATATTGTAATCAGAT 6043 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| ||||| ||||| || | ||||| || ||||| || ||| Sbjct 6044 AGAGTGCGACCATCTTCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGATCTGGGGGA 6103 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| || || ||| |||||| | || ||||| || | ||| || Sbjct 6104 ATACCTTCTTTGTCCTGGATCTTAGCT-TTTACATTCTCGATGGTGTCTGAAGGTTCCAC 6162 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 || || ||||| |||||||| || | ||| || ||||| || ||||| | ||| | || Sbjct 6163 TTCCAATGTAATTGTTTTACCAGTTAAAGTCTTCACAAAGATCTGCATTCTAGAAGAAAA 6222 Query 15376 A 15376 | Sbjct 6223 A 6223 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| ||| || ||||| ||||| || |||||||| ||||| ||||| Sbjct 5264 CCACCTCTCAATCGTAATACCAAATGGAGGGTCGACTCTTTTTGGATGTTATAATCAGAA 5323 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| |||||||| ||||| | ||||||||||||||||| ||| Sbjct 5324 AGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGG 5383 Query 15257 ATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || || ||||||| |||||| |||| || ||||| || || Sbjct 5384 ATACCTTCTTTATCTTGAATTTTTGCT-TTTACATTTTCAATAGTATCAGATGGCTCCAC 5442 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || || || || | || || || || || |||||| Sbjct 5443 TTCCAAAGTAATCGTCTTCCCAGTTAATGTCTTGACGAATATCTGCATA 5491 Score = 134 bits (148), Expect = 1e-26 Identities = 171/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | || ||||| || || || || ||||| || ||||| || Sbjct 5492 CCACCTCTTAAACGAAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTGTAGTCAG-- 5549 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | ||||| ||||| ||||||||| | || |||||||||||||| || Sbjct 5550 ACAATGTACGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTG 5609 Query 15255 GAATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | || ||||| ||||| || ||||||| ||||| |||| || |||||| || Sbjct 5610 GGATGCCTTCCTTGTCTTGAATTTTTGCT-TTTACGTTTTCAATTGTATCGGATGGCTCA 5668 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||||||||| || |||| ||||||||||||||||||||| Sbjct 5669 ACTTCCAATGTAATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCATA 5719 Score = 129 bits (142), Expect = 4e-25 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| || ||||| || || || || |||||||| || || ||||| Sbjct 4352 CCTCCTCTCAATCGCAAGACTAAGTGCAGTGTAGATTCTTTTTGGATATTATAATCTGAA 4411 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || |||||||| || || | ||||||||||| ||||| || Sbjct 4412 AGCGTGCGGCCATCCTCCAATTGTTTCCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGT 4471 Query 15257 ATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTA 15314 || ||||||||||| | ||||||| || || |||| ||||| || | || ||| | Sbjct 4472 ATACCTTCTTTGTCTTGGATTTTTGCT-TTAACGTTTTCAATGGTGTC-CGATGGTTCCA 4529 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | ||||| ||||| ||||| || || |||||||||||||| |||||||| Sbjct 4530 CTTCTAATGTAATTGTTTTTCCAGTAAGAGTTTTTACAAAGATTTGCAT 4578 Score = 129 bits (142), Expect = 4e-25 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | || ||||| || || || || ||||| || || || || Sbjct 5756 CCACCTCTTAAACGAAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTATAGTCAG-- 5813 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| ||| | ||||| ||||| ||||||||| | || |||||||||||||| || Sbjct 5814 ACAATGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTG 5873 Query 15255 GAATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | || ||||| ||||| || ||||||| ||||| |||| || |||||| || Sbjct 5874 GGATGCCTTCCTTGTCTTGAATTTTTGCT-TTTACGTTTTCAATTGTATCGGATGGCTCA 5932 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||||||||| || |||| ||||| ||||||||||||||| Sbjct 5933 ACTTCCAATGTAATGGTTTTTCCAGTCAAGGTTTTCACAAAAATTTGCATA 5983 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||| || || ||||| || ||||| ||||| || ||||| ||||| | Sbjct 4580 CCTCCTCTTAATCTCAATACCAAATGTAGAGTGGATTCTTTCTGAATGTTATAATCAGAT 4639 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| || ||||| ||||| | || ||||| ||||| || || Sbjct 4640 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGAGGT 4699 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||||||||| || || ||| || || | || || ||||| | ||| || Sbjct 4700 ATTCCTTCTTTGTCTTGGATCTTAGCT-TTGGCATTCTCGATAGTATCAGAAGGTTCCAC 4758 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || || || |||||||| |||||||||||||| Sbjct 4759 TTCCAATGTAATGGTCTTTCCCGTAAGAGTTTTCACAAAAATTTGCAT 4806 >seq22504 Length=90246 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||| | || || || || | ||||| || || || || || ||||| | Sbjct 25758 CCACCCCTCAAACGCAACACCAAGTGCAAAGTGGATTCCTTCTGGATATTATAATCCGAT 25699 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | ||||||| || ||||| |||||| |||| | |||||| || ||| ||| Sbjct 25698 AGAGTACGACCGTCTTCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGG 25639 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| |||||| ||||||| |||| || |||||| | ||| || Sbjct 25638 ATACCTTCCTTGTCTTGAATTTTAGCCTTTACATTTTCGATCGTATCGGAAGGTTCAACC 25579 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || ||||| ||||| || ||||| || ||||||||||| Sbjct 25578 TCGAGGGTTATTGTTTTCCCTGTAAGTGTTTTCACGAAAATTTGCAT 25532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362062646772105