Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq22504 102 7e-17 seq22544 96.9 3e-15 seq9911 96.9 3e-15 >seq22504 Length=90246 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 ||||||| |||||| || || ||||| || ||||| ||||||| | || |||| Sbjct 25743 AACACCAAGTGCAAAGTGGATTCCTTCTGGATATTATAATCCGATAGAGTACGACCGTCT 25684 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 |||| ||||||||| || | ||||| | |||||||| || | || || ||||| Sbjct 25683 TCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGGATACCTTCCTTGTCT 25624 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 |||||| ||||| | ||| |||||| ||| || |||| ||| || ||| Sbjct 25623 TGAATTTTAGCCTTTACATTTTCGATCGTATCGGAAGGTTCAACCTCGAGGGTTATTGTT 25564 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTA 19045 || ||||| | ||||| || |||||||||||| || Sbjct 25563 TTCCCTGTAAGTGTTTTCACGAAAATTTGCATTGTA 25528 >seq22544 Length=59602 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATT-TTGGT 21196 || ||| |||| |||||||||||| || | | || || || ||||||||| || | Sbjct 43442 GATGTTCCCCAAATCGCCGACGTGACGTACGTCTGCTTCTGGTCCGCCGTGATCCTTACT 43501 Query 21197 GCGTAGGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGT 21256 | | |||||| ||||| ||||||| || ||||||||||| || | |||||||| |||| Sbjct 43502 GTG-AGGGTTGAAGTGGGCGCCGGCTGAAATGCAGCCGTTGGTGTTATCGCCGAATTCGT 43560 Query 21257 GAACGTGAAAGCCGTGCAGTCC 21278 ||| ||| || ||||| || || Sbjct 43561 GAATGTGGAATCCGTGAAGGCC 43582 >seq9911 Length=12084 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||| |||||||||| || | || ||||| || |||||||||||||| | Sbjct 5984 CCTCCTCTCAATCTTAACACCAAATGAAGTGTGGACTCTTTCTGAATATTGTAATCAGAT 6043 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | || |||| || || || ||| | || | || ||| ||||| ||| Sbjct 6044 AGAGTGCGACCATCTTCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGATCTGGGGGA 6103 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| || || |||||| | ||| || || ||| ||| | Sbjct 6104 ATACCTTCTTTGTCCTGGATCTTAGCTTTTACATTCTCGATGGTGTCTGAAGGTTCCACT 6163 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTA 19045 || | ||||| |||||||| |||||||| || ||||| || |||||| || Sbjct 6164 TCCAATGTAATTGTTTTACCAGTTAAAGTCTTCACAAAGATCTGCATTCTA 6214 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| ||||| ||| |||| ||| | || || |||||||||||||||||||| | Sbjct 4806 TTCCTCCTCTCAACCGTAATACCAGGTGAAGAGTTGATTCCTTTTGAATATTGTAATCTG 4865 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | || | || |||| || || || ||| | || | | || ||||| | Sbjct 4866 ATAGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAATATCAAACGTTGTTGATCGGGAG 4925 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || || ||||| ||| || ||| || | | | ||||| | || ||| Sbjct 4926 GGATTCCTTCCTTGTCTTGAATCTTTGCTTTCACATTTTCTATGGTATCAGCTGGTTCCA 4985 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||||| || ||||| ||||||||||| |||||||| ||||| Sbjct 4986 CTTCAAGTGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATCTGCAT 5034 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| || || || |||| || | || || || || ||||| || ||||| | Sbjct 4578 TTCCTCCTCTTAATCTCAATACCAAATGTAGAGTGGATTCTTTCTGAATGTTATAATCAG 4637 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | || | || |||| ||||||||| ||| |||| | | ||| ||||| | Sbjct 4638 ATAAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGAG 4697 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || |||||||| || || ||| | | ||| |||||| ||| ||| Sbjct 4698 GTATTCCTTCTTTGTCTTGGATCTTAGCTTTGGCATTCTCGATAGTATCAGAAGGTTCCA 4757 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | |||||||| || || || | |||||| ||||||||||||||| Sbjct 4758 CTTCCAATGTAATGGTCTTTCCCGTAAGAGTTTTCACAAAAATTTGCATT 4807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414439385938570