Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13]
26,405 sequences; 423,765,647 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq1220 293 2e-74
>seq1220
Length=9943
Score = 293 bits (324), Expect = 2e-74
Identities = 600/883 (68%), Gaps = 14/883 (2%)
Strand=Plus/Plus
Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATC---GTCCTTATTTGACATAACAGACAT 12858
|||||| ||| |||| || ||||||| ||| | | | | ||| |||| |
Sbjct 7110 TTAAAAGTCAGCATCTGTAGTGAATACATTATCCAAGACATCACTTG---TAACGCCTAC 7166
Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918
|||||| ||||| | |||| |||||||||||||||| ||||| || || || || |
Sbjct 7167 TTTTTGGTATTCTCCAACTTTTTTTTCAAAAAAGTTAGTTTTACCCTCCGTGGATATGAT 7226
Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978
| ||||||||| || ||||| | ||| ||| ||||| ||| |||| ||| ||
Sbjct 7227 ATTCATAAAATCAAATGGATTGCTTGAATTATAAACTTTTTCACAACCTAGTTCGTTCAA 7286
Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038
||||||||||| ||||| || || ||||| |||| | | |||||||||||||||||
Sbjct 7287 TAATCTGTCAGCGACAAATTCAATATACTGACTCATAGATTTGCAGTTCATTCCTATTAA 7346
Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098
| ||||||| || || || | ||| | || || || ||||| || ||| || ||
Sbjct 7347 GCTAACAGGCAAGGCATCGGTAAGAAACTCTTGCTCGATTTCAACCGCGTCGCAAATAAT 7406
Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTA-AACATCATA--CATGC 13155
|| ||| || | | | || ||| || | | | || || ||| || ||
Sbjct 7407 ATCGACGATT-CGAGATTTC--GACGGTTTTTGTACAATATAAGAAAATAATAAGCAAGC 7463
Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215
||| ||| | |||||||||||||| | ||||| || || || || |||||||||||
Sbjct 7464 AAATTCATAATGCAATCCTTCATCGCGGGATATTAATTCATTGGAGAAAGTTAGACCCGG 7523
Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275
|||||| |||| ||||| | |||||| || | |||||| || || || || |||||
Sbjct 7524 CATAAGTCCTCTCTTTTTCAACCAAAAAATTGAAGCAAAGCTTCCGGAGAAGAAAATTCC 7583
Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335
||| ||||| || || |||| || | ||||| | || | |||||| |||||
Sbjct 7584 TTCGACTGCAGCGAAAGCTACTAAACGCTCACCGAAGGTCGCCTCTTTACTGCTGATCCA 7643
Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395
| ||||||||| ||||||| ||||| | ||||||| || || |||||
Sbjct 7644 TTGCAGGGCCCAGTTAGCTTTTTTGGCTACGCAAGGTAGTGTTTCTATCGCATTGAATAA 7703
Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455
| | | ||| || || ||| ||||| || || || | | ||| ||||||||
Sbjct 7704 AAATTCTTTCTCTTTCGGGTCGCTGATATACGTTTCAATAAGCATGCTGTACATTTCGCT 7763
Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515
||||||||| || || || ||||| ||||| |||||||| | || || | ||| |||||
Sbjct 7764 ATGAATATTCTCAATTGCAATTTGAAAACCGTAAAAACACCGGGCTTCAGTTACTTGAAC 7823
Query 13516 TTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574
|| || ||||| | ||| | | ||||| ||||| || || || ||||| ||||
Sbjct 7824 CTCTTGACTAAAA-CGTTCCACCAGATTTTCATTAACGATTCCATCGGATGCAGCGAAAA 7882
Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAA 13634
| || | | || || ||||| | | | |||| || | || || ||||| |
Sbjct 7883 ATGCCAAGACGTATTTGATAAAATGTCTCTCGTCATCGGTTAATTTATTCCAATGATCTA 7942
Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677
|||| | ||||||||||| || || |||||||| || ||
Sbjct 7943 TATCTCTAGATAAATCTACTTCTTCGGTTGTCCAAAACGAGGC 7985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430843705149810
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |