Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1220 293 2e-74 >seq1220 Length=9943 Score = 293 bits (324), Expect = 2e-74 Identities = 600/883 (68%), Gaps = 14/883 (2%) Strand=Plus/Plus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATC---GTCCTTATTTGACATAACAGACAT 12858 |||||| ||| |||| || ||||||| ||| | | | | ||| |||| | Sbjct 7110 TTAAAAGTCAGCATCTGTAGTGAATACATTATCCAAGACATCACTTG---TAACGCCTAC 7166 Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| ||||| | |||| |||||||||||||||| ||||| || || || || | Sbjct 7167 TTTTTGGTATTCTCCAACTTTTTTTTCAAAAAAGTTAGTTTTACCCTCCGTGGATATGAT 7226 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 | ||||||||| || ||||| | ||| ||| ||||| ||| |||| ||| || Sbjct 7227 ATTCATAAAATCAAATGGATTGCTTGAATTATAAACTTTTTCACAACCTAGTTCGTTCAA 7286 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 ||||||||||| ||||| || || ||||| |||| | | ||||||||||||||||| Sbjct 7287 TAATCTGTCAGCGACAAATTCAATATACTGACTCATAGATTTGCAGTTCATTCCTATTAA 7346 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||||||| || || || | ||| | || || || ||||| || ||| || || Sbjct 7347 GCTAACAGGCAAGGCATCGGTAAGAAACTCTTGCTCGATTTCAACCGCGTCGCAAATAAT 7406 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTA-AACATCATA--CATGC 13155 || ||| || | | | || ||| || | | | || || ||| || || Sbjct 7407 ATCGACGATT-CGAGATTTC--GACGGTTTTTGTACAATATAAGAAAATAATAAGCAAGC 7463 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||| ||| | |||||||||||||| | ||||| || || || || ||||||||||| Sbjct 7464 AAATTCATAATGCAATCCTTCATCGCGGGATATTAATTCATTGGAGAAAGTTAGACCCGG 7523 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 |||||| |||| ||||| | |||||| || | |||||| || || || || ||||| Sbjct 7524 CATAAGTCCTCTCTTTTTCAACCAAAAAATTGAAGCAAAGCTTCCGGAGAAGAAAATTCC 7583 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335 ||| ||||| || || |||| || | ||||| | || | |||||| ||||| Sbjct 7584 TTCGACTGCAGCGAAAGCTACTAAACGCTCACCGAAGGTCGCCTCTTTACTGCTGATCCA 7643 Query 13336 CTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 | ||||||||| ||||||| ||||| | ||||||| || || ||||| Sbjct 7644 TTGCAGGGCCCAGTTAGCTTTTTTGGCTACGCAAGGTAGTGTTTCTATCGCATTGAATAA 7703 Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 | | | ||| || || ||| ||||| || || || | | ||| |||||||| Sbjct 7704 AAATTCTTTCTCTTTCGGGTCGCTGATATACGTTTCAATAAGCATGCTGTACATTTCGCT 7763 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 ||||||||| || || || ||||| ||||| |||||||| | || || | ||| ||||| Sbjct 7764 ATGAATATTCTCAATTGCAATTTGAAAACCGTAAAAACACCGGGCTTCAGTTACTTGAAC 7823 Query 13516 TTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 || || ||||| | ||| | | ||||| ||||| || || || ||||| |||| Sbjct 7824 CTCTTGACTAAAA-CGTTCCACCAGATTTTCATTAACGATTCCATCGGATGCAGCGAAAA 7882 Query 13575 aaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAA 13634 | || | | || || ||||| | | | |||| || | || || ||||| | Sbjct 7883 ATGCCAAGACGTATTTGATAAAATGTCTCTCGTCATCGGTTAATTTATTCCAATGATCTA 7942 Query 13635 AATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 |||| | ||||||||||| || || |||||||| || || Sbjct 7943 TATCTCTAGATAAATCTACTTCTTCGGTTGTCCAAAACGAGGC 7985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430843705149810