Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3779 159 5e-35 seq19918 114 2e-21 seq19917 114 2e-21 >seq3779 Length=99272 Score = 159 bits (176), Expect = 5e-35 Identities = 192/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || ||||| || | | ||| || ||||| ||||||||||| || |||||||| || Sbjct 65147 CGCAAAACGTCACCGAAAAGTTCTACGTGATAATATCCAAGGAATTACTAAGCCAGCAAT 65088 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||||| ||||||||||||||||| || || | ||||||||| |||| ||||| | Sbjct 65087 TAGACGTCTCGCTCGTCGTGGTGGAGTTAAACGCATTTCTGGATTGATCTACGAAGAAAC 65028 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | ||||| | | ||||||| ||| ||| | || ||||| Sbjct 65027 GCGTGGAGTGTTGAAAGTATTCCTAGAAAATGTTATCCGTGACGCTGTAACTTACACCGA 64968 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | || || || || | |||||| | || || |||||||| |||||||| Sbjct 64967 ACACGCGAAGAGAAAAACCGTTACAGCTATGGATGTAGTGTACGCATTGAAGCGTCAAGG 64908 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | || || ||||| Sbjct 64907 ACGTACCTTGTACGGGTTTGG 64887 >seq19918 Length=21032 Score = 114 bits (126), Expect = 2e-21 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| ||| || ||||| || ||||||||||||||||| || || Sbjct 5521 CGCGAAACGACATCGCAAGGTTCTACGCGATAATATTCAAGGAATCACCAAGCCGGCGAT 5580 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||| | || |||||||| ||||| || ||| | || || || | || ||||||| Sbjct 5581 CAGGCGTTTAGCCCGTCGTGGCGGAGTGAAACGTATATCGGGTCTGATATACGAAGAGAC 5640 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| || | ||||| | || ||||| Sbjct 5641 ACGGGGCGTACTCAAGGTATTCCTGGAGAACGTAATTCGCGATGCCGTAACGTACACCGA 5700 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| || || | ||||| ||||||| || |||| || || || Sbjct 5701 ACATGCCAAGAGGAAGACGGTAACGGCTATGGACGTCGTCTACGCGCTGAAGCGGCAGGG 5760 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | | || || || || Sbjct 5761 ACGTACGCTGTACGGCTTCGG 5781 Score = 114 bits (126), Expect = 2e-21 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| ||| || ||||| || ||||||||||||||||| || || Sbjct 19494 CGCGAAACGACATCGCAAGGTTCTACGCGATAATATTCAAGGAATCACCAAGCCGGCGAT 19553 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||| | || |||||||| ||||| || ||| | || || || | || ||||||| Sbjct 19554 CAGGCGTTTAGCCCGTCGTGGCGGAGTGAAACGTATATCGGGTCTGATATACGAAGAGAC 19613 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| || | ||||| | || ||||| Sbjct 19614 ACGGGGCGTACTCAAGGTATTCCTGGAGAACGTAATTCGCGATGCCGTAACGTACACCGA 19673 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| || || | ||||| ||||||| || |||| || || || Sbjct 19674 ACATGCCAAGAGGAAGACGGTAACGGCTATGGACGTCGTCTACGCGCTGAAGCGGCAGGG 19733 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | | || || || || Sbjct 19734 ACGTACGCTGTACGGCTTCGG 19754 Score = 113 bits (124), Expect = 7e-21 Identities = 183/262 (70%), Gaps = 1/262 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| ||| || ||||| || ||||||||||||||||| || || Sbjct 1591 CGCGAAACGACATCGCAAGGTTCTACGCGATAATATTCAAGGAATCACCAAGCCGGCGAT 1650 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||| | || |||||||| ||||| || ||| | || || || | || ||||||| Sbjct 1651 CAGGCGTTTAGCCCGTCGTGGCGGAGTGAAACGTATATCGGGTCTGATATACGAAGAGAC 1710 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCG 16610 || | || | ||| | ||||| ||| ||| || | |||| | | | || |||| Sbjct 1711 ACGGGGCGTACTCAAGGTATTCCTGGAGAACGTAATTCGCGATGCCGTAACGGTACACCG 1770 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | || || || | ||||| || || | ||||| ||||||| || |||| || || | Sbjct 1771 AACATGCCAAGAGGAAGACGGTAACGGCTATGGACGTCGTCTACGCGCTGAAGCGGCAGG 1830 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | |||| | | || || || || Sbjct 1831 GACGTACGCTGTACGGCTTCGG 1852 >seq19917 Length=26674 Score = 114 bits (126), Expect = 2e-21 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || || ||||||| ||| || ||||| || ||||||||||||||||| || || Sbjct 17566 CGCGAAACGACATCGCAAGGTTCTACGCGATAATATTCAAGGAATCACCAAGCCGGCGAT 17625 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||| | || |||||||| ||||| || ||| | || || || | || ||||||| Sbjct 17626 CAGGCGTTTAGCCCGTCGTGGCGGAGTGAAACGTATATCGGGTCTGATATACGAAGAGAC 17685 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| || | ||||| | || ||||| Sbjct 17686 ACGGGGCGTACTCAAGGTATTCCTGGAGAACGTAATTCGCGATGCCGTAACGTACACCGA 17745 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || | ||||| || || | ||||| ||||||| || |||| || || || Sbjct 17746 ACATGCCAAGAGGAAGACGGTAACGGCTATGGACGTCGTCTACGCGCTGAAGCGGCAGGG 17805 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | | || || || || Sbjct 17806 ACGTACGCTGTACGGCTTCGG 17826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79051057723665