Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13]
26,405 sequences; 423,765,647 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq3779 159 5e-35
seq19918 114 2e-21
seq19917 114 2e-21
>seq3779
Length=99272
Score = 159 bits (176), Expect = 5e-35
Identities = 192/261 (74%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| || ||||| || | | ||| || ||||| ||||||||||| || |||||||| ||
Sbjct 65147 CGCAAAACGTCACCGAAAAGTTCTACGTGATAATATCCAAGGAATTACTAAGCCAGCAAT 65088
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| ||||| ||||||||||||||||| || || | ||||||||| |||| ||||| |
Sbjct 65087 TAGACGTCTCGCTCGTCGTGGTGGAGTTAAACGCATTTCTGGATTGATCTACGAAGAAAC 65028
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || ||||| | ||||| | | ||||||| ||| ||| | || |||||
Sbjct 65027 GCGTGGAGTGTTGAAAGTATTCCTAGAAAATGTTATCCGTGACGCTGTAACTTACACCGA 64968
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || | || || || || | |||||| | || || |||||||| ||||||||
Sbjct 64967 ACACGCGAAGAGAAAAACCGTTACAGCTATGGATGTAGTGTACGCATTGAAGCGTCAAGG 64908
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|||| | || || |||||
Sbjct 64907 ACGTACCTTGTACGGGTTTGG 64887
>seq19918
Length=21032
Score = 114 bits (126), Expect = 2e-21
Identities = 182/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| || || ||||||| ||| || ||||| || ||||||||||||||||| || ||
Sbjct 5521 CGCGAAACGACATCGCAAGGTTCTACGCGATAATATTCAAGGAATCACCAAGCCGGCGAT 5580
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | ||| | || |||||||| ||||| || ||| | || || || | || |||||||
Sbjct 5581 CAGGCGTTTAGCCCGTCGTGGCGGAGTGAAACGTATATCGGGTCTGATATACGAAGAGAC 5640
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| || | ||||| | || |||||
Sbjct 5641 ACGGGGCGTACTCAAGGTATTCCTGGAGAACGTAATTCGCGATGCCGTAACGTACACCGA 5700
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || || | ||||| || || | ||||| ||||||| || |||| || || ||
Sbjct 5701 ACATGCCAAGAGGAAGACGGTAACGGCTATGGACGTCGTCTACGCGCTGAAGCGGCAGGG 5760
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|||| | | || || || ||
Sbjct 5761 ACGTACGCTGTACGGCTTCGG 5781
Score = 114 bits (126), Expect = 2e-21
Identities = 182/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| || || ||||||| ||| || ||||| || ||||||||||||||||| || ||
Sbjct 19494 CGCGAAACGACATCGCAAGGTTCTACGCGATAATATTCAAGGAATCACCAAGCCGGCGAT 19553
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | ||| | || |||||||| ||||| || ||| | || || || | || |||||||
Sbjct 19554 CAGGCGTTTAGCCCGTCGTGGCGGAGTGAAACGTATATCGGGTCTGATATACGAAGAGAC 19613
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| || | ||||| | || |||||
Sbjct 19614 ACGGGGCGTACTCAAGGTATTCCTGGAGAACGTAATTCGCGATGCCGTAACGTACACCGA 19673
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || || | ||||| || || | ||||| ||||||| || |||| || || ||
Sbjct 19674 ACATGCCAAGAGGAAGACGGTAACGGCTATGGACGTCGTCTACGCGCTGAAGCGGCAGGG 19733
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|||| | | || || || ||
Sbjct 19734 ACGTACGCTGTACGGCTTCGG 19754
Score = 113 bits (124), Expect = 7e-21
Identities = 183/262 (70%), Gaps = 1/262 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| || || ||||||| ||| || ||||| || ||||||||||||||||| || ||
Sbjct 1591 CGCGAAACGACATCGCAAGGTTCTACGCGATAATATTCAAGGAATCACCAAGCCGGCGAT 1650
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | ||| | || |||||||| ||||| || ||| | || || || | || |||||||
Sbjct 1651 CAGGCGTTTAGCCCGTCGTGGCGGAGTGAAACGTATATCGGGTCTGATATACGAAGAGAC 1710
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCG 16610
|| | || | ||| | ||||| ||| ||| || | |||| | | | || ||||
Sbjct 1711 ACGGGGCGTACTCAAGGTATTCCTGGAGAACGTAATTCGCGATGCCGTAACGGTACACCG 1770
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
| || || || | ||||| || || | ||||| ||||||| || |||| || || |
Sbjct 1771 AACATGCCAAGAGGAAGACGGTAACGGCTATGGACGTCGTCTACGCGCTGAAGCGGCAGG 1830
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
| |||| | | || || || ||
Sbjct 1831 GACGTACGCTGTACGGCTTCGG 1852
>seq19917
Length=26674
Score = 114 bits (126), Expect = 2e-21
Identities = 182/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| || || ||||||| ||| || ||||| || ||||||||||||||||| || ||
Sbjct 17566 CGCGAAACGACATCGCAAGGTTCTACGCGATAATATTCAAGGAATCACCAAGCCGGCGAT 17625
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| | ||| | || |||||||| ||||| || ||| | || || || | || |||||||
Sbjct 17626 CAGGCGTTTAGCCCGTCGTGGCGGAGTGAAACGTATATCGGGTCTGATATACGAAGAGAC 17685
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||| | ||||| ||| ||| || | ||||| | || |||||
Sbjct 17686 ACGGGGCGTACTCAAGGTATTCCTGGAGAACGTAATTCGCGATGCCGTAACGTACACCGA 17745
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || || | ||||| || || | ||||| ||||||| || |||| || || ||
Sbjct 17746 ACATGCCAAGAGGAAGACGGTAACGGCTATGGACGTCGTCTACGCGCTGAAGCGGCAGGG 17805
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|||| | | || || || ||
Sbjct 17806 ACGTACGCTGTACGGCTTCGG 17826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79051057723665
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |