Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1220 322 5e-83 >seq1220 Length=9943 Score = 322 bits (356), Expect = 5e-83 Identities = 649/955 (68%), Gaps = 20/955 (2%) Strand=Plus/Plus Query 21114 TAAAAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTT---CtttttttG 21170 |||||||| | |||||| ||||||||| | ||| |||||||| | | ||| Sbjct 7099 TAAAAATAA--AATTAAAAGTCAGCATCTGTAGTGAATACATTATCCAAGACATCACTTG 7156 Query 21171 ACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTT 21230 ||| || | |||||| || || | |||| ||||||| ||||| || || || || | Sbjct 7157 ---TAACGCCTACTTTTTGGTATTCTCCAACTTTTTTTTCAAAAAAGTTAGTTTTACCCT 7213 Query 21231 CCAATGATATAGAT-TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 || ||||| ||| | |||||||||||||||||| || ||| | | ||| | |||| Sbjct 7214 CCGTGGATAT-GATATTCATAAAATCAAATGGATTGCTTGAATTATAAACTTTTTCACAA 7272 Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAA 21349 || ||||| |||||||| || || |||||||| ||||| |||| ||| ||| || Sbjct 7273 CCTAGTTCGTTCAATAATCTGTCAGCGACAAATTCAATATACTGACTCATAGATTTGCAG 7332 Query 21350 TTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACG 21409 ||||| || || || | ||||| | || | || | ||| || || || || Sbjct 7333 TTCATTCCTATTAAGCTAACAGGCAAGGCATCGGTAAGAAACTCTTGCTCGATTTCAACC 7392 Query 21410 GCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGAT---ACAATAATTGTTTA 21466 || || ||| |||| | || | |||| | | | || | |||||| | | Sbjct 7393 GCGTCGCAAATAATATCGACGATTCGAGATTT-CGACGGTTTTTGTACAATATAAGA--A 7449 Query 21467 AACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAA 21526 || | || || ||||| ||| ||||||| |||||||| | |||||||||||| || Sbjct 7450 AATAATAAGCAAGCAAATTCATAATGCAATCCTTCATCGCGGGATATTAATTCATTGGAG 7509 Query 21527 AATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCT 21586 || |||| ||| ||||| | |||||||||||| |||||||| ||||| ||||| ||| Sbjct 7510 AAAGTTAGACCCGGCATAAGTCCTCTCTTTTTCAACCAAAAAATTGAAGCAAAGCTTCCG 7569 Query 21587 GAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCT 21646 || |||||||| || || || ||||| || || ||||| || |||||| | || | ||| Sbjct 7570 GAGAAGAAAATTCCTTCGACTGCAGCGAAAGCTACTAAACGCTCACCGAAGGTCGCCTCT 7629 Query 21647 TTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCA 21706 ||| ||||||| ||||| || || |||| | ||| | ||| || Sbjct 7630 TTACTGCTGATCCATTGCAGGGCCCAGTTAGCTTTTTTGGCTACGCAAGGTAGTGTTTCT 7689 Query 21707 ATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNA 21766 || || || || | | | ||| || | ||| | || Sbjct 7690 ATCGCATTGAATAAAAATTCTTTCTCTTTCGGGTCGCTGATATACGTTTCAATAAGCATG 7749 Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 || |||||||| ||| ||||| || || || || ||||| ||||||||||| | || Sbjct 7750 CTGTACATTTCGCTATGAATATTCTCAATTGCAATTTGAAAACCGTAAAAACACCGGGCT 7809 Query 21827 TCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | ||||||||| || ||||| |||| ||| |||||||| || |||||||| Sbjct 7810 TCAGTTACTTGAACCTCTTGACTAAAA-CGTTCCACCAGATTTTCATTAACGATTCCATC 7868 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 || || ||||||||||| | | ||| ||||||| || |||| ||| |||||||| Sbjct 7869 GGATGCAGCGAAAAATGCCAAGACGTATTTGATAAAATGTCTCTCGTCATCGGTTAATTT 7928 Query 21946 TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005 ||||||| || |||| | ||||||||||||||||| ||||||||||| | || | Sbjct 7929 ATTCCAATGATCTATATCTCTAGATAAATCTACTTCTTCGGTTGTCCAAAA-CGAGGCTT 7987 Query 22006 AGCCTT-TTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 | ||| ||| || || ||| ||||| |||| |||||| || | ||||| Sbjct 7988 CGGCTTGTTTGTATTTAGCCCAAATATCGGGATATTCTATTGGGAAAACAACAAA 8042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531725239492200