Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq9911 113 4e-20 seq22544 84.2 2e-11 >seq9911 Length=12084 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||| ||||| | || ||||| | || || | ||| | ||| | Sbjct 4807 AATGCAAATTTTTGTGAAAACTCTTACGGGAAAGACCATTACATTGGAAGTGGAACCTTC 4748 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || |||||| | | |||| ||||| ||||||||||| |||||||| ||||| Sbjct 4747 TGATACTATCGAGAATGCCAAAGCTAAGATCCAAGACAAAGAAGGAATACCTCCAGATCA 4688 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 ||| | | |||| | || ||||| | ||||||| | | | | | | | || |||| Sbjct 4687 ACAGCGTTTAATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTA-CTTTATCTGATTATA 4629 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||| |||||||| ||| | ||| |||| ||||| | |||||||||| Sbjct 4628 ACATTCAGAAAGAATCCACTCTACATTTGGTATTGAGATTAAGAGGAGGAA 4578 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | ||||||||||| | ||||||||| | || || | ||| | ||| || Sbjct 4579 AATGCAAATCTTTGTAAAAACTCTTACTGGAAAAACAATTACATTAGAAGTGGAACCATC 4520 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| || | || ||| ||| || ||||||||||| |||||||| || || Sbjct 4519 GGACACCATTGAAAACGTTAAAGCAAAAATCCAAGACAAAGAAGGTATACCTCCAGACCA 4460 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACG---TCAGCGACTA 26944 ||| | | |||| | ||| |||||| | || |||| | ||| ||| || || Sbjct 4459 GCAACGTTTGATTTTTGCCGGGAAACAATTGGAGGATGGCCG-CACGCTTTCA--GATTA 4403 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || |||||||||||||| | || | ||| || || | |||||||| Sbjct 4402 TAATATCCAAAAAGAATCTACACTGCACTTAGTCTTGCGATTGAGAGGAGG 4352 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| ||||||||||| | ||||| | ||| | ||| || Sbjct 5262 ATGCAAATTTTTGTTAAAACTTTAACTGGAAAGACCATCACTTTAGAAGTTGAACCATCT 5203 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || ||| ||||| || |||||||| || || || |||||| Sbjct 5202 GATACCATTGAAAATGTAAAAGCTAAGATCCAGGATAAAGAAGGTATTCCACCTGATCAA 5143 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| |||| || | || || |||||| | ||||||| | | | | | || |||||| Sbjct 5142 CAACGACTAATATTCGCTGGTAAACAATTAGAAGATGGTCGTACCCTTTCAGATTATAAC 5083 Query 26949 ATTCAAAAAGAATCTAC 26965 || ||||| |||||||| Sbjct 5082 ATCCAAAAGGAATCTAC 5066 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| |||||||| || | || || | ||| | ||| || Sbjct 5034 ATGCAGATTTTTGTTAAAACTTTAACTGGTAAGACTATTACACTTGAAGTGGAACCAGCT 4975 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || ||| ||||||| ||||| ||||| || |||||||||||| Sbjct 4974 GATACCATAGAAAATGTGAAAGCAAAGATTCAAGACAAGGAAGGAATCCCTCCCGATCAA 4915 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | | ||||| ||| | ||||||| | | | | || || || Sbjct 4914 CAACGTTTGATATTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTATCAGATTACAAT 4855 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| ||||| ||| | || ||||| | | | |||||||||| Sbjct 4854 ATTCAAAAGGAATCAACTCTTCACCTGGTATTACGGTTGAGAGGAGGAA 4806 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || |||||||| ||| | || || | ||| | ||| | Sbjct 6211 AATGCAGATCTTTGTGAAGACTTTAACTGGTAAAACAATTACATTGGAAGTGGAACCTTC 6152 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | || ||| ||||| ||||||||||| || || || ||||| Sbjct 6151 AGACACCATCGAGAATGTAAAAGCTAAGATCCAGGACAAAGAAGGTATTCCCCCAGATCA 6092 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| || | || | | |||||| ||| | ||||||| | | | | || || || Sbjct 6091 ACAGCGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGTCGCACTCTATCTGATTACAA 6032 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| || || | ||| |||| | ||| | |||||||| Sbjct 6031 TATTCAGAAAGAGTCCACACTTCATTTGGTGTTAAGATTGAGAGGAGG 5984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||||||||| || ||||||||| | || || | ||| | || || | Sbjct 5718 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCC 5659 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| ||| ||| ||||| ||||| || || || || ||| Sbjct 5658 GATACAATTGAAAACGTAAAAGCAAAAATTCAAGACAAGGAAGGCATCCCACCAGACCAA 5599 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || ||||| ||| | ||||||| | | | ||||| || Sbjct 5598 CAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGCCGTACATTGTCTGACTACAAT 5539 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||||||| ||||| |||| || Sbjct 5538 ATCCAAAAGGAATCTACTCTCCATTTGGTGCT 5507 >seq22544 Length=59602 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 115195 AAAGGCTTGCACGGATTTCATGTTCACGAATTCGGCGACACGAGCAACGGCTGCACGTCT 115254 |||||| | |||||||| || |||||||||||||||| | | ||||||||||| || Sbjct 43585 AAAGGCCTTCACGGATTCCACATTCACGAATTCGGCGATAACACCAACGGCTGCATTTCA 43526 Query 115255 GCAGGCGAGCATTTTAACCCTACGAACATGGCTCACGGTGCGCCCAACTCTGCCGTTCGT 115314 || |||| || || |||||| | | || |||||| | || | | | ||| ||| Sbjct 43525 GCCGGCGCCCACTTCAACCCTCACAGTAAGGATCACGGCGGACCAGAAGCAGACGTACGT 43466 Query 115315 CACGTCGGTGATCTTGGCAATATTGATGC 115343 |||||||| ||| | || || || || || Sbjct 43465 CACGTCGGCGATTTGGGGAACATCGAAGC 43437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478504411491600