Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq22639 170 5e-37 seq9764 145 2e-29 seq1220 127 5e-24 >seq22639 Length=125898 Score = 170 bits (188), Expect = 5e-37 Identities = 348/506 (69%), Gaps = 12/506 (2%) Strand=Plus/Minus Query 111327 ACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGA 111386 || |||||||| || |||| || | || || ||| | || ||||| ||| ||| Sbjct 12998 ACTACAAAGCGTGTATTCTGGAGAGGCGTCGTTGAGGAATTACTATGGTTCATTAAGGGA 12939 Query 111387 AGTACAAATGCAAATGAACTTGCAGCAAAAA--ATGTAAAAATTTGGGATGGAAATGGAT 111444 || || || ||| || | || ||| |||| | || || || ||| | | |||| | Sbjct 12938 AGCACTAACGCACAT--ATTTTGAGCGAAAAGAACGTCAATATATGGAAAGCAAATAGTA 12881 Query 111445 CACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAG 111504 | ||||| || ||||||| |||||| | |||| | |||||||||||||| |||||| Sbjct 12880 CTCGTGATTTCTTAGATTCTGTTGGTTTAATCGATAGAGAAGAAGGTGATCTAGGACCAA 12821 Query 111505 TTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCACGACTCATATG 111564 ||||||| |||||||||||||| | ||| || || || | || ||||| | | ||| Sbjct 12820 TTTACGGCTTTCAATGGCGCCATTATGGGGCTGATTATACAAATATGCATGCCGATTAT- 12762 Query 111565 ATTCACA-GGGAACTGATCAATTACAGAATGTCATTGATCAAATTAAGAA-CAACCCAAC 111622 | | | | ||| | ||||| || | | || || || ||| | ||| | ||| | Sbjct 12761 ACTAATAGGGGGATAGATCAGTTGATGGAAGTGATAAATACAATAAGGAATCGACCGCA- 12703 Query 111623 TTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAAAATGGCACTTCC 111682 | | | ||||| |||||| |||||||||| ||| || | |||||||| ||||| Sbjct 12702 TGATAGACGCATCATTATGTGTGCATGGAATCCAGTTGATATACCTAAAATGGCTCTTCC 12643 Query 111683 ACCATGTCATCTTATGTGCCAGTTTTATGTACACGA--CGGGATGCTTTCATGCCAAATG 111740 ||| || ||| || || |||| ||| ||| || | | || |||| | Sbjct 12642 ACCTTGCCATTGCTTGGTACAATTTTTTGT-TGCGAATAACGA-GTTATCTTGCCTTTTA 12585 Query 111741 TATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTA 111800 ||||| ||||||| ||||| |||||||| || ||||||||||||||||| || || || Sbjct 12584 TATCAAAGATCTGCCGATATGGGTCTTGGAGTACCGTTTAATATTGCAAGCTATGCCTTA 12525 Query 111801 CTTACTTGCTTAATCGCTCATTTTAC 111826 | || | | | |||||||| |||| Sbjct 12524 TTAACCTACATGATCGCTCACATTAC 12499 >seq9764 Length=88291 Score = 145 bits (160), Expect = 2e-29 Identities = 277/408 (68%), Gaps = 0/408 (0%) Strand=Plus/Minus Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 ||| || ||||| || ||||| || || || ||| | ||||| ||||| | ||| ||||| Sbjct 27764 AGCACCTATGCCGACAGCTTCGACGGCTCAAATCTTAGGAAATAACGAATCCTTTGAACC 27705 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 || || || | || | | || || | || |||||||| | ||| |||||| | Sbjct 27704 GTACACTTCGAACATCTACACCAGACGCGTCTTGTCTGGAGAATTCCAGGTCGTTAATCA 27645 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928 | || | |||||| |||| | | || |||| ||| ||||||||| | || Sbjct 27644 CCATCTGTTGCGCGATCTTACCGATAGAGATCTCTGGGACGACGACATGAAGAATCAGAT 27585 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTAT 364988 | ||||| | |||||| | ||||| ||||| ||| | || || ||| | ||| || Sbjct 27584 CCTCGCCAATTGTGGTTCGATACAGAATATTCCGGGAATACCGGATGATATCAAGAAGAT 27525 Query 364989 TTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGG 365048 |||||||||||||||||||| || | | | ||| | ||||||||||| || Sbjct 27524 CTACAAAACCGTATGGGAAATCTCTAATAAGGTTATTATTAACCAAGCGGCCGATCGTGG 27465 Query 365049 TGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAA 365108 ||||| ||| |||||| |||||| | || || | | |||| | | || | Sbjct 27464 CGCTTTCATCGATCAGAGTCAGTCGCTGAATCTACACGTCGAGAAGCCTAGTTACGGCGT 27405 Query 365109 GCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||||| || ||||||||||||||||| ||| | ||||| || Sbjct 27404 TCTTACATCGATCCATTTCTACGGGTGGAAGAAAGGTTTGAAGACGGG 27357 Score = 141 bits (156), Expect = 2e-28 Identities = 276/408 (68%), Gaps = 0/408 (0%) Strand=Plus/Minus Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 ||| || ||||| || ||||| || || || ||| | ||||| ||||| | ||| ||||| Sbjct 24628 AGCACCTATGCCGACAGCTTCGACGGCTCAAATCTTAGGAAATAACGAATCCTTTGAACC 24569 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 || || || | || | | || || | || |||||||| | ||| ||||| | Sbjct 24568 GTACACTTCGAACATCTACACCAGACGCGTCTTGTCTGGAGAATTCCAGGTCGTTAACCA 24509 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928 | || | |||||| |||| | | || |||| ||| ||||||||| | || Sbjct 24508 CCATCTGTTGCGCGATCTTACCGATAGAGATCTCTGGGACGACGACATGAAGAATCAGAT 24449 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTAT 364988 | ||||| | |||||| | ||||| ||||| ||| | || || ||| | ||| || Sbjct 24448 CCTCGCCAATTGTGGTTCGATACAGAATATTCCGGGAATACCGGATGATATCAAGAAGAT 24389 Query 364989 TTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGG 365048 |||||||||||||||||||| || | | | ||| | ||||||||||| || Sbjct 24388 CTACAAAACCGTATGGGAAATCTCTAATAAGGTTATTATTAACCAAGCGGCCGATCGTGG 24329 Query 365049 TGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAA 365108 ||||| ||| |||||| |||||| | || || | | |||| | | || | Sbjct 24328 CGCTTTCATCGATCAGAGTCAGTCGCTGAATCTACACGTCGAGAAGCCTAGTTACGGCGT 24269 Query 365109 GCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||||||| || ||||||||||||||||| ||| | ||||| || Sbjct 24268 TCTTACATCGATCCATTTCTACGGGTGGAAGAAAGGTTTGAAGACGGG 24221 >seq1220 Length=9943 Score = 127 bits (140), Expect = 5e-24 Identities = 335/507 (66%), Gaps = 16/507 (3%) Strand=Plus/Minus Query 22450 TGGGCGCTGAAATGGATGAACAATGAA----CGTTCATTCGCGGAACGTCTTATTGCATT 22505 ||||| ||| ||||||| | || | || || | |||| || ||| | | || || Sbjct 7655 TGGGCCCTGCAATGGATCAGCAGTAAAGAGGCGACC-TTCGGTGAGCGTTTAGTAGCTTT 7597 Query 22506 TGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaa 22565 |||| || ||||| |||||||| || ||| ||| | |||| |||||| | ||||| Sbjct 7596 CGCTGCAGTCGAAGGAATTTTCTTCTCCGGAAGCTTTGCTTCAATTTTTTGGTTGAAAAA 7537 Query 22566 aCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCT 22625 | | | |||||||||||||||| || || ||||| ||||| ||| ||||| || | Sbjct 7536 GAGAGGACTTATGCCGGGTCTAACTTTCTCCAATGAATTAATATCCCGCGATGAAGGATT 7477 Query 22626 TCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAA-CTTCCATAT- 22683 ||| || ||||| || | ||| | | |||| | || ||| | || | || Sbjct 7476 GCATTATGAATTTGCTTGCTTATTATTT---TCTTATATTGTACAAAAACCGTCGAAATC 7420 Query 22684 --GAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCG 22741 ||| | | ||||||||| | || |||||| | || | ||| || || Sbjct 7419 TCGAA----TCGTCGATATTATTTGCGACGCGGTTGAAATCGAGCAAGAGTTTCTTACCG 7364 Query 22742 AGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAAT 22801 | || || || || || | || || || || | |||| |||||| |||||| ||| Sbjct 7363 ATGCCTTGCCTGTTAGCTTAATAGGAATGAACTGCAAATCTATGAGTCAGTATATTGAAT 7304 Query 22802 TTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACGTCGTTAATC 22861 |||| || || | |||| | ||| |||| || ||| |||||| |||| Sbjct 7303 TTGTCGCTGACAGATTATTGAACGAACTAGGTTGTGAAAAAGTTTATAATTCAAGCAATC 7244 Query 22862 CATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAG 22921 ||||||| | ||| | | || || || || || || || || || ||||||| || Sbjct 7243 CATTTGATTTTATGAATATCATATCCACGGAGGGTAAAACTAACTTTTTTGAAAAAAAAG 7184 Query 22922 TTGGTGAATACCAAAAAGCAGGTGTTA 22948 |||| ||||||||||||| ||| |||| Sbjct 7183 TTGGAGAATACCAAAAAGTAGGCGTTA 7157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302912657148710