Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9911 174 1e-38 seq22504 91.5 1e-13 >seq9911 Length=12084 Score = 174 bits (192), Expect = 1e-38 Identities = 179/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||||| || |||||| | || ||| | |||||||| | || Sbjct 6211 AATGCAGATCTTTGTGAAGACTTTAACTGGTAAAACAATTACATTGGAAGTGGAACCTTC 6152 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||| | || |||| || | || ||||||||||| ||||| || || Sbjct 6151 AGACACCATCGAG--AATGTAAAAGCTAAGATCCAG-GACAAAGAAGGTATTCCCCCAGA 6095 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || ||||||||||| ||||| ||||||| ||||||| | ||||| Sbjct 6094 TCAACAGCGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGTCGCACTCTATCTGATTA 6035 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| ||||| ||||| || ||||| ||| |||| | |||||||| Sbjct 6034 CAATATTCAGAAAGAGTCCACACTTCATTTGGTGTTAAGATTGAGAGGAGG 5984 Score = 156 bits (172), Expect = 4e-33 Identities = 176/233 (76%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || ||| | || || || |||| ||| | |||||||| | || Sbjct 4807 AATGCAAATTTTTGTGAAAACTCTTACGGGAAAGACCATTACATTGGAAGTGGAACCTTC 4748 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| ||||||||| | || |||| || | || ||||||||||| || || || || Sbjct 4747 TGATACTATCGAG--AATGCCAAAGCTAAGATCCAA-GACAAAGAAGGAATACCTCCAGA 4691 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | |||||||| || ||||| || ||||||| ||| ||| | ||||| Sbjct 4690 TCAACAGCGTTTAATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTATCTGATTA 4631 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| ||||||||||| |||||||| || | || |||||||||||| Sbjct 4630 TAACATTCAGAAAGAATCCACTCTACATTTGGTATTGAGATTAAGAGGAGGAA 4578 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| ||| | || || ||| | || ||| | |||||||| | || Sbjct 4579 AATGCAAATCTTTGTAAAAACTCTTACTGGAAAAACAATTACATTAGAAGTGGAACCATC 4520 Query 25058 TGACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || | | ||||||||| || ||||||||||| || || || |||| Sbjct 4519 GGACACCATTGAAAACGTTAAAGCAAAAATCCAA-GACAAAGAAGGTATACCTCCAGACC 4461 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | ||||||||||| |||||||| || |||| ||||| | ||||| | Sbjct 4460 AGCAACGTTTGATTTTTGCCGGGAAACAATTGGAGGATGGCCGCACGCTTTCAGATTATA 4401 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| ||||||||||| || || || ||||| | | | |||||||| Sbjct 4400 ATATCCAAAAAGAATCTACACTGCACTTAGTCTTGCGATTGAGAGGAGG 4352 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| ||||| | || || ||| | |||||| | ||||| || | || Sbjct 4350 ATGCAAATATTTGTTAAGACCCTTACTGGGAAAACTATCACATTGGAAGTAGAACCTTCA 4291 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | | |||| |||| ||| || |||||||| ||||| || || || Sbjct 4290 GATACAATTGAAAACGTTAAAGCTAAAATTCAG-GATAAAGAAGGTATTCCTCCAGATCA 4232 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || |||||||| ||||||| || ||| | |||||||| Sbjct 4231 GCAGCGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGGCGAACTCTTTCAGATTACAA 4172 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| ||||| || |||||||| || || Sbjct 4171 TATTCAAAAGGAATCTACCCTACATTTGGTACT 4139 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||||| || ||||| | || ||| | |||||||| | || Sbjct 5034 ATGCAGATTTTTGTTAAAACTTTAACTGGTAAGACTATTACACTTGAAGTGGAACCAGCT 4975 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || |||| ||||| | ||| ||||| ||||| || || || || || Sbjct 4974 GATACCATAGAAAATGTGAAAGCAAAGATTCAA-GACAAGGAAGGAATCCCTCCCGATCA 4916 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| ||||| ||||||| ||||||| | |||||||| Sbjct 4915 ACAACGTTTGATATTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTATCAGATTACAA 4856 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||||| ||||| || || || | || || || | |||||||||| Sbjct 4855 TATTCAAAAGGAATCAACTCTTCACCTGGTATTACGGTTGAGAGGAGGAA 4806 Score = 118 bits (130), Expect = 9e-22 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || ||||| || || || ||||||| | ||||| || | ||| Sbjct 5262 ATGCAAATTTTTGTTAAAACTTTAACTGGAAAGACCATCACTTTAGAAGTTGAACCATCT 5203 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| || | || || |||||||| ||||||||||| Sbjct 5202 GATACCATTGAA--AATGTAAAAGCTAAGATCCAG-GATAAAGAAGGTATTCCACCTGAT 5146 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || || || || |||||||||||||||| ||| || | ||||| Sbjct 5145 CAACAACGACTAATATTCGCTGGTAAACAATTAGAAGATGGTCGTACCCTTTCAGATTAT 5086 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || ||||| ||||| || || |||||||| Sbjct 5085 AACATCCAAAAGGAATCTACCCTTCATTTAGT 5054 >seq22504 Length=90246 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 24985 TACA-AAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTC 25043 |||| ||||| ||||||||||| || || || || | || || ||| | || || || Sbjct 25517 TACAGAAACGCTACAATGCAAATTTTCGTGAAAACACTTACAGGGAAAACAATAACCCTC 25576 Query 25044 GAAGTGGAGTCGTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGG 25102 || || || | || || || ||||| | || || |||| ||| ||||| ||||| Sbjct 25577 GAGGTTGAACCTTCCGATACGATCGAAAATGTAAAGGCTAAAATTCA-AGACAAGGAAGG 25635 Query 25103 GATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 || ||||| || || || || |||| || || || ||||| || ||||| | ||| || Sbjct 25636 TATCCCACCCGATCAGCAACGTCTTATATTCGCTGGTAAACAGTTGGAAGACGGTCGTAC 25695 Query 25163 TGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 | | ||||| ||||| || || |||||||| | || || ||| Sbjct 25696 TCTATCGGATTATAATATCCAGAAGGAATCCACTTTGCACTTGGTG 25741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433188550310075