Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1220 435 3e-117 seq16367 132 5e-26 seq8370 129 7e-25 seq1063 129 7e-25 seq25909 125 8e-24 seq25391 125 8e-24 seq8368 123 3e-23 seq22368 122 1e-22 seq8371 122 1e-22 >seq1220 Length=9943 Score = 435 bits (482), Expect = 3e-117 Identities = 652/922 (71%), Gaps = 4/922 (0%) Strand=Plus/Plus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 |||||||||||| ||||||||||||||||| || || || || || ||| ||||| Sbjct 7167 TTTTTGGTATTCTCCAACTTTTTTTTCAAAAAAGTTAGTTTTACCCTCCGTGGATATGAT 7226 Query 92862 ATTCACTAGTG--ATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAA 92919 ||||| | | |||||| | | |||||| ||||||| | |||| ||| Sbjct 7227 ATTCATAAAATCAAATGGATTGCTTGAATTATAAACTTTTTCACAACCTAGTTCGTTCAA 7286 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 |||||| ||||| |||||||| || |||||| ||| | | || |||||||||| | Sbjct 7287 TAATCTGTCAGCGACAAATTCAATATACTGACTCATAGATTTGCAGTTCATTCCTATTAA 7346 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 | ||||| | || ||||| |||||| |||| ||||||| |||| || || | | Sbjct 7347 GCTAACAGGCAAGGCATCGGT-AAGAAACTCTTGCTCGATTTCAACCGCGTCGCAAATAA 7405 Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 | || | | || | || | ||||||||||| | |||| | | |||||| |||| Sbjct 7406 TATCGACGATTCGAGATTTCGACGGTTTTTGTACAATATAAGAAAATAATAAGCAAGCAA 7465 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | || ||| || ||||| || || ||||| || |||||| ||| |||| ||| || | Sbjct 7466 ATTCATAATGCAATCCTTCATCGCGGGATATTAATTCATTGGAGAAAGTTAGACCCGGCA 7525 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 ||||||| || || | |||||| ||||||||||| || || || || || || |||| Sbjct 7526 TAAGTCCTCTCTTTTTCAACCAAAAAATTGAAGCAAAGCTTCCGGAGAAGAAAATTCCTT 7585 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 | || || || || || || | ||| || | || | || |||||||||||||||| Sbjct 7586 CGACTGCAGCGAAAGCTACTAAACGCTCACCGAAGGTCGCCTCTTTACTGCTGATCCATT 7645 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | ||||| | |||||||| | |||||||||||||| || || || |||| Sbjct 7646 GCAGGGCCCAGTTAGCTTTTTTGGCTACGCAAGGTAGTGTTTCTATCGCATTGAATAAAA 7705 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 | ||| ||| | || || | || || || || || | || |||||||| || Sbjct 7706 ATTCTTTCTCTTTCGGGTCGCTGATATACGTTTCAATAAGCATGCTGTACATTTCGCTAT 7765 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | | |||||| ||||||||||| || ||||| ||||| | ||||| || | || || | Sbjct 7766 GAATATTCTCAATTGCAATTTGAAAACCGTAAAAACACCGGGCTTCAGTTACTTGAACCT 7825 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 ||||| ||| | || || ||||||||||| || || ||||||||||| || ||||| | Sbjct 7826 CTTGACTAAAACGTTCCACCAGATTTTCATTAACGATTCCATCGGATGCAGCGAAAAATG 7885 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGAT 93578 |||| | | || ||||||||| |||| ||||| | | |||| ||||| || || Sbjct 7886 CCAAGACGTATTTGATAAAATGTCTCTCGTCATCGGTTAATTTATTCCAATGATCTATAT 7945 Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 || | || | ||| ||||||||| ||||||||||| ||||| |||| |||||| || Sbjct 7946 CTCTAGATAAATCTACTTCTTCGGTTGTCCAAAACGAGGCTTCGGCTTGTTTGTATTTAG 8005 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 |||| || || |||||| ||||| || | ||||| || || || || ||||| || | Sbjct 8006 CCCAAATATCGGGATATTCTATTGGGAAAACAACAAATCGTTTGGGATTTTCTTTAAGAA 8065 Query 93699 ACGGCTCTAGTTGTGGGTCAAA 93720 || ||||||| |||||||| Sbjct 8066 GTGGTTCTAGTTCGGGGTCAAA 8087 >seq16367 Length=24547 Score = 132 bits (146), Expect = 5e-26 Identities = 82/87 (94%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 22848 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCACATGGGAGC 22907 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 22908 GTGGGTTCGAACCCCACACCTGACAAA 22934 >seq8370 Length=67800 Score = 129 bits (142), Expect = 7e-25 Identities = 85/92 (92%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 126261 TTACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--G 126317 ||||| ||||||||||||||| |||||||||||||||||||||| || ||||||| | | Sbjct 46861 TTACAAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCCGGTTCCCACATG 46920 Query 126318 GGAGCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||||||||| Sbjct 46921 GGAGCGTGGGTTCGAACCCCACACCTGACAAA 46952 Score = 129 bits (142), Expect = 7e-25 Identities = 85/92 (92%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 126261 TTACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--G 126317 ||||| ||||||||||||||| |||||||||||||||||||||| || ||||||| | | Sbjct 47988 TTACAAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCCGGTTCCCACATG 48047 Query 126318 GGAGCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||||||||| Sbjct 48048 GGAGCGTGGGTTCGAACCCCACACCTGACAAA 48079 >seq1063 Length=86749 Score = 129 bits (142), Expect = 7e-25 Identities = 80/85 (94%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 80633 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCACATGGGAGC 80574 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 80573 GTGGGTTCGAACCCCACACCTGACA 80549 >seq25909 Length=7478 Score = 125 bits (138), Expect = 8e-24 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| || ||||||| | |||||| Sbjct 1793 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCCGGTTCCCACATGGGAGC 1852 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||| || Sbjct 1853 GTGGGTTCGAACCCCACACCTGACAGAT 1880 >seq25391 Length=32092 Score = 125 bits (138), Expect = 8e-24 Identities = 83/90 (92%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 126261 TTACA-GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--G 126317 ||||| ||||||||||||||| |||||||||||||||||||||| || ||||||| | | Sbjct 975 TTACAAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCCGGTTCCCACATG 916 Query 126318 GGAGCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||||||||| Sbjct 915 GGAGCGTGGGTTCGAACCCCACACCTGACA 886 >seq8368 Length=38921 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| | |||||||| | ||||||| Sbjct 36019 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTTTGGTTCCCGATTGGGAGCG 35960 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 35959 TGGGTTCGAACCCCACACCTGACAA 35935 Score = 122 bits (134), Expect = 1e-22 Identities = 78/84 (93%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| | |||||||| | ||||||| Sbjct 38393 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTTTGGTTCCCGATTGGGAGCG 38334 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 38333 TGGGTTCGAACCCCACACCTGACA 38310 >seq22368 Length=1850 Score = 122 bits (134), Expect = 1e-22 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| Sbjct 365 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCCTAGGGGA 424 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||||||| |||||| |||||| ||| Sbjct 425 GCGTGGGTTCGAATCCCACATCTGACATATT 455 >seq8371 Length=23536 Score = 122 bits (134), Expect = 1e-22 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||| Sbjct 5248 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCCTAGGGGA 5307 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||||||| |||||| |||||| ||| Sbjct 5308 GCGTGGGTTCGAATCCCACATCTGACATATT 5338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556677001132200