Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9911 176 4e-39 seq22504 141 8e-29 seq9764 93.3 4e-14 seq1220 89.7 4e-13 >seq9911 Length=12084 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||||||||||||||| ||||| || | || |||||||||||| | | Sbjct 5034 ATGCAGATTTTTGTTAAAACTTTAACTGGTAAGACTATTACACTTGAAGTGGAACCAGCT 4975 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||| |||||||||||||| || || || ||||||||| Sbjct 4974 GATACCATAGAAAATGTGAAAGCAAAGATTCAAGACAAGGAAGGAATCCCTCCCGATCAA 4915 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | |||||||| ||||| || || || ||| ||||| | || |||||||| Sbjct 4914 CAACGTTTGATATTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTATCAGATTACAAT 4855 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| ||||| || | || | || || || ||| | ||||| Sbjct 4854 ATTCAAAAGGAATCAACTCTTCACCTGGTATTACGGTTGAGAGGAGG 4808 Score = 172 bits (190), Expect = 5e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||||||||| || || || ||||| | ||||| ||| | | Sbjct 5262 ATGCAAATTTTTGTTAAAACTTTAACTGGAAAGACCATCACTTTAGAAGTTGAACCATCT 5203 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| || || || || || || ||||||||||| |||||| Sbjct 5202 GATACCATTGAAAATGTAAAAGCTAAGATCCAGGATAAAGAAGGTATTCCACCTGATCAA 5143 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || ||||| || || ||||| ||||| ||| || ||| | || ||||| ||| Sbjct 5142 CAACGACTAATATTCGCTGGTAAACAATTAGAAGATGGTCGTACCCTTTCAGATTATAAC 5083 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| ||| | |||||||| || |||||| | || ||| Sbjct 5082 ATCCAAAAGGAATCTACCCTTCATTTAGTATTACGATTGAGGGGTGGT 5035 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || || ||||| | || | ||||||||| | | Sbjct 4578 ATGCAAATCTTTGTAAAAACTCTTACTGGAAAAACAATTACATTAGAAGTGGAACCATCG 4519 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| |||||| |||||||| || ||||| || || || || Sbjct 4518 GACACCATTGAAAACGTTAAAGCAAAAATCCAAGACAAAGAAGGTATACCTCCAGACCAG 4459 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || |||||||| ||||| || |||||| |||||| | || ||||| || Sbjct 4458 CAACGTTTGATTTTTGCCGGGAAACAATTGGAGGATGGCCGCACGCTTTCAGATTATAAT 4399 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||||||||| || | || ||||| ||||||||| | |||||| Sbjct 4398 ATCCAAAAAGAATCTACACTGCACTTAGTCTTGCGATTGAGAGGAGGT 4351 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || |||||||| |||||||| | || | ||||||||| | | Sbjct 6210 ATGCAGATCTTTGTGAAGACTTTAACTGGTAAAACAATTACATTGGAAGTGGAACCTTCA 6151 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || || ||||| || |||||||| || |||||| Sbjct 6150 GACACCATCGAGAATGTAAAAGCTAAGATCCAGGACAAAGAAGGTATTCCCCCAGATCAA 6091 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||||||||| || || || ||| ||||| | || |||||||| Sbjct 6090 CAGCGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGTCGCACTCTATCTGATTACAAT 6031 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| ||||| ||||| | ||||| || || ||||| | |||||| Sbjct 6030 ATTCAGAAAGAGTCCACACTTCATTTGGTGTTAAGATTGAGAGGAGGT 5983 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||| | || || || || | || | ||||||||| | | Sbjct 4806 ATGCAAATTTTTGTGAAAACTCTTACGGGAAAGACCATTACATTGGAAGTGGAACCTTCT 4747 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || |||| || || |||||||| || || || || || |||||| Sbjct 4746 GATACTATCGAGAATGCCAAAGCTAAGATCCAAGACAAAGAAGGAATACCTCCAGATCAA 4687 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || |||||||| || ||| || || | || ||||| ||| Sbjct 4686 CAGCGTTTAATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTATCTGATTATAAC 4627 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||||||||| ||||||| || ||| |||| | ||||| Sbjct 4626 ATTCAGAAAGAATCCACTCTACATTTGGTATTGAGATTAAGAGGAGG 4580 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || ||||| || || ||| | ||| | |||||||| | | Sbjct 5490 ATGCAGATATTCGTCAAGACATTAACTGGGAAGACGATTACTTTGGAAGTGGAGCCATCT 5431 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || || ||||| ||||| || ||| Sbjct 5430 GATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAA 5371 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || ||||| || ||||| || || ||| || || | || ||||| ||| Sbjct 5370 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAAC 5311 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || |||||||| || ||| | ||||| || || |||||| | || ||| Sbjct 5310 ATCCAAAAAGAGTCGACCCTCCATTTGGTATTACGATTGAGAGGTGGT 5263 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || || ||||| | || | ||||| || | || Sbjct 5718 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCC 5659 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| |||||||||||||||||| || || ||||| || ||| Sbjct 5658 GATACAATTGAAAACGTAAAAGCAAAAATTCAAGACAAGGAAGGCATCCCACCAGACCAA 5599 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || ||||| || || || ||| ||| || | || || ||||| Sbjct 5598 CAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGCCGTACATTGTCTGACTACAAT 5539 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| ||||| || | ||||| || Sbjct 5538 ATCCAAAAGGAATCTACTCTCCATTTGGT 5510 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || || ||||| | || | ||||| || | || Sbjct 5982 ATGCAAATTTTTGTGAAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCC 5923 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| |||||||||||||||||| || || ||||| || ||| Sbjct 5922 GATACAATTGAAAACGTAAAAGCAAAAATTCAAGACAAGGAAGGCATCCCACCAGACCAA 5863 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || ||||| || || || ||| ||| || | || || || || Sbjct 5862 CAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACATTGTCTGACTATAAT 5803 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| ||||| || | ||||| || Sbjct 5802 ATCCAAAAGGAATCTACTCTCCATTTGGT 5774 >seq22504 Length=90246 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || || ||||| | || || || || ||| | || Sbjct 25532 ATGCAAATTTTCGTGAAAACACTTACAGGGAAAACAATAACCCTCGAGGTTGAACCTTCC 25591 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||||||||||||||||| ||||| ||||||||||| Sbjct 25592 GATACGATCGAAAATGTAAAGGCTAAAATTCAAGACAAGGAAGGTATCCCACCCGATCAG 25651 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||||||||| || || |||||||| || || || || | || ||||| || Sbjct 25652 CAACGTCTTATATTCGCTGGTAAACAGTTGGAAGACGGTCGTACTCTATCGGATTATAAT 25711 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || |||||||| | || || || ||||| ||| | || ||| Sbjct 25712 ATCCAGAAGGAATCCACTTTGCACTTGGTGTTGCGTTTGAGGGGTGGT 25759 Score = 140 bits (154), Expect = 3e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || ||||| | || || || || ||| | ||||||| | || || | || Sbjct 21011 ACAGGGAAAACAATAACCCTCGAGGTTGAACCTTCCGATACGATCGAAAATGTAAAGGCT 21070 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||||||||| ||||| ||||||||||| |||||||||||||| || || ||| Sbjct 21071 AAAATTCAAGACAAGGAAGGTATCCCACCCGATCAGCAACGTCTTATATTCGCTGGTAAA 21130 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| || || || || | || ||||| || ||||| |||||||||||| |||| Sbjct 21131 CAGTTGGAAGACGGTCGTACTCTATCGGATTATAATATTCAGAAAGAATCCACCTTACAC 21190 Query 22423 TTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || ||||| ||| | || ||| || Sbjct 21191 TTGGTATTGCGTTTGAGAGGCGGTATT 21217 >seq9764 Length=88291 Score = 93.3 bits (102), Expect = 4e-14 Identities = 172/248 (69%), Gaps = 17/248 (7%) Strand=Plus/Plus Query 130012 GCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTC----- 130066 || ||||| |||||||||||||| ||||||| ||| ||||| || |||||||| | Sbjct 25813 GCCTCGACGCGTTTCATAAACAAGTCGGGTATCCAAAGGGCATAAAACAAATCCCTAGCA 25872 Query 130067 -GCGCTT-TTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTC 130124 |||||| ||| || | ||| | | | || | |||||| ||||| | || || Sbjct 25873 CGCGCTTCTTCGATGC-CGGTATTCTTCTTCA-----AATTCAAG-AAATCCAAGATATC 25925 Query 130125 GGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTTG---CCCCCTTGGTC 130181 ||||||||| || || | ||||| || | || ||| || ||| || ||||| || Sbjct 25926 GGCGTGCCAGGGCTCCAAGTAAATGGCGAAAGCTCCCGGCCTCTTGTTTCCACCTTGATC 25985 Query 130182 AACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCC 130241 ||||| ||| | | ||| ||| | || | | ||| | | |||| ||||||| ||| Sbjct 25986 AACGTAACGCGCCGTATTATTGAAAACCCTTAGCATCGGCACCAAACCGTTGGATACGCC 26045 Query 130242 GTTTGTGC 130249 ||| |||| Sbjct 26046 GTTCGTGC 26053 >seq1220 Length=9943 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 117069 GCTTTCGCCATTGTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATC 117128 |||||||| |||||||| |||||||| || || || |||||| | || |||| | Sbjct 7601 GCTTTCGCTGCAGTCGAAGGAATTTTCTTCTCCGGAAGCTTTGCTTCAATTTTTTGGTTG 7542 Query 117129 AAGACCAAAGGTCTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAA 117188 || | | ||| || |||||||||||||| || ||| ||||||||||| || || ||| Sbjct 7541 AAAAAGAGAGGACTTATGCCGGGTCTAACTTTCTCCAATGAATTAATATCCCGCGATGAA 7482 Query 117189 GGTTTACACACCGATTTTGCGTGC 117212 || || || || ||||| ||| Sbjct 7481 GGATTGCATTATGAATTTGCTTGC 7458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419592926938825