Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9911 116 4e-21 seq22504 95.1 1e-14 seq22544 93.3 4e-14 >seq9911 Length=12084 Score = 116 bits (128), Expect = 4e-21 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||||||| || || || | ||||| |||||||| ||||| ||||| | |||||| Sbjct 4361 AATCGCAAGACTAAGTGCAGTGTAGATTCTTTTTGGATATTATAATCTGAAAGCGTGCGG 4420 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || | ||||| || || | ||||| || ||||| || |||||||| || || Sbjct 4421 CCATCCTCCAATTGTTTCCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGTATACCTTCT 4480 Query 127016 TTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGG 127073 ||||| |||||| ||||| | ||| ||| | |||||||| || ||||| | | Sbjct 4481 TTGTCTTGGATTTT-TGCTTTAACGTT-TTCAATGGTGTCCGATGGTTCCACTTCTAATG 4538 Query 127074 TCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | | ||||| || || |||||||||||||| || ||||| Sbjct 4539 TAATTGTTTTTCCAGTAAGAGTTTTTACAAAGATTTGCAT 4578 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| ||||||||||| | || |||||||| |||||||||||||| | |||||| Sbjct 5993 AATCTTAACACCAAATGAAGTGTGGACTCTTTCTGAATATTGTAATCAGATAGAGTGCGA 6052 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || | || || || || ||||||||||||| ||||| || || || || || Sbjct 6053 CCATCTTCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATACCTTCT 6112 Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075 |||||| ||| || || | | |||| |||||| | | || ||||| | || Sbjct 6113 TTGTCCTGGATCTTAGCTTTTACATTCTCGATGGTGTCTGAAGGTTCCACTTCCAATGTA 6172 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| || || | ||| || ||||| |||||||| Sbjct 6173 ATTGTTTTACCAGTTAAAGTCTTCACAAAGATCTGCAT 6210 Score = 105 bits (116), Expect = 6e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || ||||| || | |||||||||| ||||| || ||||||||||||||||| Sbjct 4124 CCCCCACGTAAGCGAAGTACCAAATGTAGGGTAGATTCCTTTTGAATATTGTAATCTGAA 4183 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | |||||||| || ||||||| ||||||||||| ||||| Sbjct 4184 AGAGTTCGCCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGCTGCTGATCTGGAGGA 4243 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || || ||| ||| ||| |||| | ||| ||| | || || | | || | Sbjct 4244 ATACCTTCTTTATCC-TGAATTTTAGCTTTAACGTT-TTCAATTGTATCTGAAGGTTCTA 4301 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| || || || || || ||||| || ||||| Sbjct 4302 CTTCCAATGTGATAGTTTTCCCAGTAAGGGTCTTAACAAATATTTGCAT 4350 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||| || | ||||||||| | ||||| || ||||| |||||||| || | Sbjct 5492 CCACCTCTTAAACGAAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTGTAGTCAGAC 5551 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | || || |||||| |||| || || || || || || || Sbjct 5552 AATGTACGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGG 5611 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| |||||||| ||| ||| ||||| | | ||| | || || | ||| || Sbjct 5612 ATGCCTTCCTTGTCT-TGAATTTTTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAAC 5670 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| || |||| |||||||||||||| ||||| Sbjct 5671 TTCCAATGTAATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 5718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || || || |||| || | || || || ||||||||||||||||| | |||||| Sbjct 4817 AACCGTAATACCAGGTGAAGAGTTGATTCCTTTTGAATATTGTAATCTGATAGAGTGCGA 4876 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || | || || ||||| | ||||| || || ||||||||||| || || ||| Sbjct 4877 CCATCTTCCAATTGCTTGCCAGCAAATATCAAACGTTGTTGATCGGGAGGGATTCCTTCC 4936 Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||| | ||| | | ||| || | | ||| | ||| || | || ||||| | || Sbjct 4937 TTGT-CTTGAATCTTTGCTTTCACATTTTCTATGGTATCAGCTGGTTCCACTTCAAGTGT 4995 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || || | |||||| |||||||||||||| Sbjct 4996 AATAGTCTTACCAGTTAAAGTTTTAACAAAAATCTGCAT 5034 >seq22504 Length=90246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || ||||||||||| || | || || || || || ||||| ||||| Sbjct 25758 CCACCCCTCAAACGCAACACCAAGTGCAAAGTGGATTCCTTCTGGATATTATAATCCGAT 25699 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || || | |||||| |||||| | || | || ||||||||||| || Sbjct 25698 AGAGTACGACCGTCTTCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGG 25639 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||||| ||| | | ||||| || || | | || || Sbjct 25638 ATACCTTCCTTGTCTTGAATTTTAGCCTTTACATTTTCGATCGTATCGGAAGGTTCAACC 25579 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||||| || || || ||||| || ||||| ||||| Sbjct 25578 TCGAGGGTTATTGTTTTCCCTGTAAGTGTTTTCACGAAAATTTGCAT 25532 >seq22544 Length=59602 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 50653 CGCTTCTATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTT 50712 |||||| ||||| |||| |||||||||||| || || | || | || ||||||| | Sbjct 43436 CGCTTCGATGTTCCCCAAATCGCCGACGTGACGTACGTCTGCTTCTGGTCCGCCGTGATC 43495 Query 50713 GCGGCCCAACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAA 50772 | || || ||||| ||||||| || ||||||||||| | | |||||||| Sbjct 43496 CTTACTGTGAGGGTTGAAGTGGGCGCCGGCTGAAATGCAGCCGTTGGTGTTATCGCCGAA 43555 Query 50773 TTCGTGCACGTGGAACCCGTGAAAGCCCTTT 50803 |||||| | |||||| ||||||| ||| ||| Sbjct 43556 TTCGTGAATGTGGAATCCGTGAAGGCCTTTT 43586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475343855017200