Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13]
26,405 sequences; 423,765,647 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq9911 116 4e-21
seq22504 95.1 1e-14
seq22544 93.3 4e-14
>seq9911
Length=12084
Score = 116 bits (128), Expect = 4e-21
Identities = 160/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955
|||||||| || || || | ||||| |||||||| ||||| ||||| | ||||||
Sbjct 4361 AATCGCAAGACTAAGTGCAGTGTAGATTCTTTTTGGATATTATAATCTGAAAGCGTGCGG 4420
Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015
||| || | ||||| || || | ||||| || ||||| || |||||||| || ||
Sbjct 4421 CCATCCTCCAATTGTTTCCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGTATACCTTCT 4480
Query 127016 TTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGG 127073
||||| |||||| ||||| | ||| ||| | |||||||| || ||||| | |
Sbjct 4481 TTGTCTTGGATTTT-TGCTTTAACGTT-TTCAATGGTGTCCGATGGTTCCACTTCTAATG 4538
Query 127074 TCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| | ||||| || || |||||||||||||| || |||||
Sbjct 4539 TAATTGTTTTTCCAGTAAGAGTTTTTACAAAGATTTGCAT 4578
Score = 109 bits (120), Expect = 5e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955
|||| ||||||||||| | || |||||||| |||||||||||||| | ||||||
Sbjct 5993 AATCTTAACACCAAATGAAGTGTGGACTCTTTCTGAATATTGTAATCAGATAGAGTGCGA 6052
Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015
||| || | || || || || ||||||||||||| ||||| || || || || ||
Sbjct 6053 CCATCTTCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATACCTTCT 6112
Query 127016 TTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075
|||||| ||| || || | | |||| |||||| | | || ||||| | ||
Sbjct 6113 TTGTCCTGGATCTTAGCTTTTACATTCTCGATGGTGTCTGAAGGTTCCACTTCCAATGTA 6172
Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| ||||| || || | ||| || ||||| ||||||||
Sbjct 6173 ATTGTTTTACCAGTTAAAGTCTTCACAAAGATCTGCAT 6210
Score = 105 bits (116), Expect = 6e-18
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || ||||| || | |||||||||| ||||| || |||||||||||||||||
Sbjct 4124 CCCCCACGTAAGCGAAGTACCAAATGTAGGGTAGATTCCTTTTGAATATTGTAATCTGAA 4183
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || | |||||||| || ||||||| ||||||||||| |||||
Sbjct 4184 AGAGTTCGCCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGCTGCTGATCTGGAGGA 4243
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064
|| || || || ||| ||| ||| |||| | ||| ||| | || || | | || |
Sbjct 4244 ATACCTTCTTTATCC-TGAATTTTAGCTTTAACGTT-TTCAATTGTATCTGAAGGTTCTA 4301
Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| | || | ||||| || || || || || ||||| || |||||
Sbjct 4302 CTTCCAATGTGATAGTTTTCCCAGTAAGGGTCTTAACAAATATTTGCAT 4350
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| | ||| || | ||||||||| | ||||| || ||||| |||||||| || |
Sbjct 5492 CCACCTCTTAAACGAAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTGTAGTCAGAC 5551
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || | || || |||||| |||| || || || || || || ||
Sbjct 5552 AATGTACGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGG 5611
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||| |||||||| ||| ||| ||||| | | ||| | || || | ||| ||
Sbjct 5612 ATGCCTTCCTTGTCT-TGAATTTTTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAAC 5670
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | ||||| || |||| |||||||||||||| |||||
Sbjct 5671 TTCCAATGTAATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 5718
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955
|| || || |||| || | || || || ||||||||||||||||| | ||||||
Sbjct 4817 AACCGTAATACCAGGTGAAGAGTTGATTCCTTTTGAATATTGTAATCTGATAGAGTGCGA 4876
Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015
||| || | || || ||||| | ||||| || || ||||||||||| || || |||
Sbjct 4877 CCATCTTCCAATTGCTTGCCAGCAAATATCAAACGTTGTTGATCGGGAGGGATTCCTTCC 4936
Query 127016 TTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074
|||| | ||| | | ||| || | | ||| | ||| || | || ||||| | ||
Sbjct 4937 TTGT-CTTGAATCTTTGCTTTCACATTTTCTATGGTATCAGCTGGTTCCACTTCAAGTGT 4995
Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || || || || | |||||| ||||||||||||||
Sbjct 4996 AATAGTCTTACCAGTTAAAGTTTTAACAAAAATCTGCAT 5034
>seq22504
Length=90246
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| | || ||||||||||| || | || || || || || ||||| |||||
Sbjct 25758 CCACCCCTCAAACGCAACACCAAGTGCAAAGTGGATTCCTTCTGGATATTATAATCCGAT 25699
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| || || | |||||| |||||| | || | || ||||||||||| ||
Sbjct 25698 AGAGTACGACCGTCTTCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGG 25639
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| || |||||||| ||||| ||| | | ||||| || || | | || ||
Sbjct 25638 ATACCTTCCTTGTCTTGAATTTTAGCCTTTACATTTTCGATCGTATCGGAAGGTTCAACC 25579
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | ||||| || || || ||||| || ||||| |||||
Sbjct 25578 TCGAGGGTTATTGTTTTCCCTGTAAGTGTTTTCACGAAAATTTGCAT 25532
>seq22544
Length=59602
Score = 93.3 bits (102), Expect = 4e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 50653 CGCTTCTATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTT 50712
|||||| ||||| |||| |||||||||||| || || | || | || ||||||| |
Sbjct 43436 CGCTTCGATGTTCCCCAAATCGCCGACGTGACGTACGTCTGCTTCTGGTCCGCCGTGATC 43495
Query 50713 GCGGCCCAACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCGAA 50772
| || || ||||| ||||||| || ||||||||||| | | ||||||||
Sbjct 43496 CTTACTGTGAGGGTTGAAGTGGGCGCCGGCTGAAATGCAGCCGTTGGTGTTATCGCCGAA 43555
Query 50773 TTCGTGCACGTGGAACCCGTGAAAGCCCTTT 50803
|||||| | |||||| ||||||| ||| |||
Sbjct 43556 TTCGTGAATGTGGAATCCGTGAAGGCCTTTT 43586
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475343855017200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |