Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9911 116 9e-21 >seq9911 Length=12084 Score = 116 bits (128), Expect = 9e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| || |||||||||| |||||||||| ||| || | |||||||||| ||| Sbjct 5516 TGGAGAGTAGATTCCTTTTGGATATTGTAGTCAGACAATGTACGGCCATCTTCCAATTGC 5575 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || |||||||| | ||| || ||||| || || ||||| || ||||| ||| Sbjct 5576 TTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTGAAT-TTT 5634 Query 199547 TGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||| ||| ||| | || || | || || || ||||| || || || || || || Sbjct 5635 TGCTTTTACGTTTTCAATTGTATCGGATGGCTCAACTTCCAATGTAATGGTTTTTCCAGT 5694 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | ||||| ||||||||||| Sbjct 5695 CAAGGTTTTTACAAAAATTTG 5715 Score = 116 bits (128), Expect = 9e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| || |||||||||| || ||||||| ||| || | |||||||||| ||| Sbjct 5780 TGGAGAGTAGATTCCTTTTGGATATTATAGTCAGACAATGTTCGGCCATCTTCCAATTGC 5839 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || |||||||| | ||| || ||||| || || ||||| || ||||| ||| Sbjct 5840 TTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTGAAT-TTT 5898 Query 199547 TGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||||| ||| ||| | || || | || || || ||||| || || || || || || Sbjct 5899 TGCTTTTACGTTTTCAATTGTATCGGATGGCTCAACTTCCAATGTAATGGTTTTTCCAGT 5958 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | ||||||||||||||||| Sbjct 5959 CAAGGTTTTCACAAAAATTTG 5979 Score = 107 bits (118), Expect = 5e-18 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | || ||||| || || || || | ||| || |||| ||||| | || Sbjct 4591 TCTCAATACCAAATGTAGAGTGGATTCTTTCTGAATGTTATAATCAGATAAAGTACGACC 4650 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| ||| || || || || || | |||||| || || ||| ||||||||| Sbjct 4651 ATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGAGGTATTCCTTCTTT 4710 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTC--GACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || ||||| |||| | |||| || || || | | ||| || ||||| || Sbjct 4711 GTCTTGGATCTTA-GCTTTG-GCATTCTCGATAGTATCAGAAGGTTCCACTTCCAATGTA 4768 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| |||||||||||||||||||| Sbjct 4769 ATGGTCTTTCCCGTAAGAGTTTTCACAAAAATTTG 4803 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| |||||||| ||||||| ||| || |||| | ||| | ||||||||||| || Sbjct 5288 TGGAGGGTCGACTCTTTTTGGATGTTATAATCAGAAAGAGTACGTCCATCTTCCAATTGT 5347 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| | ||| || ||||| || || |||||| || ||||| ||| Sbjct 5348 TTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGGATACCTTCTTTATCTTGAAT-TTT 5406 Query 199547 TGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || || ||| | || || | || || || ||||| || |||||||| || || Sbjct 5407 TGCTTTTACATTTTCAATAGTATCAGATGGCTCCACTTCCAAAGTAATCGTCTTCCCAGT 5466 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 | || || || || || || Sbjct 5467 TAATGTCTTGACGAATATCTG 5487 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || |||||||||| ||| || || | | || | |||||||| | || Sbjct 5060 TGAAGGGTAGATTCCTTTTGGATGTTATAATCTGAAAGGGTACGACCATCTTCTAATTGT 5119 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || ||||| || || || || || || || ||| |||||| ||||| ||||| Sbjct 5120 TTACCAGCGAATATTAGTCGTTGTTGATCAGGTGGAATACCTTCTTTATCCTGGATCTTA 5179 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || ||| | ||| || | || ||| || || || ||||| ||||| || || Sbjct 5180 GCTTTTACATTTTCAATGGTATCAGATGGTTCAACTTCTAAAGTGATGGTCTTTCCAGTT 5239 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | |||||| ||||||||||| Sbjct 5240 AAAGTTTTAACAAAAATTTG 5259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178522754244135