Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9911 105 8e-18 seq22504 96.9 4e-15 >seq9911 Length=12084 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || | ||||||| ||| | ||| ||| || || |||||||| || ||| Sbjct 5984 CCTCCTCTCAATCTTAACACCAAATGAAGTGTGGACTCTTTCTGAATATTGTAATCAGAT 6043 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || | ||||||||||| || ||||| ||||| || || | || Sbjct 6044 AGAGTGCGACCATCTTCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGATCTGGGGGA 6103 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| |||||| || | || | | ||||| | |||||| Sbjct 6104 ATACCTTCTTTGTCCTGGATCTTAGCTTTTACATTCTCGATGGTGTCTGAAGGTTCCACT 6163 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| || || ||||| || || | || || |||||||| |||||| Sbjct 6164 TCCAATGTAATTGTTTTACCAGTTAAAGTCTTCACAAAGATCTGCATT 6211 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||||||| | ||||| ||| | ||| |||||||||||||||||||| || Sbjct 5492 CCACCTCTTAAACGAAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTGTAGTCAGAC 5551 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | |||||||| ||||| || || || || ||||| | || Sbjct 5552 AATGTACGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGG 5611 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||||| | ||| || | ||| || | | | || ||| | || || Sbjct 5612 ATGCCTTCCTTGT-CTTGAATTTTTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAAC 5670 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || |||||||| || |||| ||||| ||||| |||||||| Sbjct 5671 TTCCAATGTAATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 5718 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || ||||| || | |||| |||| || ||||||||||| || || || Sbjct 4352 CCTCCTCTCAATCGCAAGACTAAGTGCAGTGTAGATTCTTTTTGGATATTATAATCTGAA 4411 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || | || || ||||| || ||||| || |||||||| | || Sbjct 4412 AGCGTGCGGCCATCCTCCAATTGTTTCCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGT 4471 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 46545 | | || ||||| ||| || | ||| | || | | | ||||| | |||||| Sbjct 4472 ATACCTTCTTTGTCTTGGAT-TTTTGCTTTAACGTTTTCAATGGTGTCCGATGGTTCCAC 4530 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || || ||||| || || || ||||| ||||||||||||||| Sbjct 4531 TTCTAATGTAATTGTTTTTCCAGTAAGAGTTTTTACAAAGATTTGCATT 4579 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||||||| | ||||| ||| | ||| |||||||||||||| ||||| || Sbjct 5756 CCACCTCTTAAACGAAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTATAGTCAGAC 5815 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | |||||||| ||||| || || || || ||||| | || Sbjct 5816 AATGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGG 5875 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 46545 | || ||||||| | ||| || | ||| || | | | || ||| | || || Sbjct 5876 ATGCCTTCCTTGT-CTTGAATTTTTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAAC 5934 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || |||||||| || |||| ||||| ||||| |||||||| Sbjct 5935 TTCCAATGTAATGGTTTTTCCAGTCAAGGTTTTCACAAAAATTTGCAT 5982 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || || || ||||| || | || |||||||| |||||||| || ||| Sbjct 4808 CCTCCTCTCAACCGTAATACCAGGTGAAGAGTTGATTCCTTTTGAATATTGTAATCTGAT 4867 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || | |||||||| || |||||||| || || || |||| || Sbjct 4868 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAATATCAAACGTTGTTGATCGGGAGGG 4927 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC-GCTCGATTCCAC 46545 | | |||||||| ||||| || | | | | || || ||| | |||||| Sbjct 4928 ATTCCTTCCTTGTCTTGAATCTTTGCTTTCACATTTTCTATGGTATCAGCT-GGTTCCAC 4986 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || || || || || || | ||||||||||| || ||||| Sbjct 4987 TTCAAGTGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATCTGCAT 5034 >seq22504 Length=90246 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || ||||||||||||| ||||| || ||||| |||||||| || || ||| Sbjct 25758 CCACCCCTCAAACGCAACACCAAGTGCAAAGTGGATTCCTTCTGGATATTATAATCCGAT 25699 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| || | ||| || || |||||||| | || ||||| |||| || Sbjct 25698 AGAGTACGACCGTCTTCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGG 25639 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| || || ||| | | | | ||| ||| | ||| || Sbjct 25638 ATACCTTCCTTGTCTTGAATTTTAGCCTTTACATTTTCGATCGTATCGGAAGGTTCAACC 25579 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | || || ||||| || || || ||||| || || ||||||||| Sbjct 25578 TCGAGGGTTATTGTTTTCCCTGTAAGTGTTTTCACGAAAATTTGCATT 25531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565051836000600