Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1220 277 2e-69 seq9911 116 4e-21 >seq1220 Length=9943 Score = 277 bits (306), Expect = 2e-69 Identities = 603/900 (67%), Gaps = 2/900 (0%) Strand=Plus/Plus Query 132595 ACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAG 132654 ||||| | |||||| ||||| || || ||||| |||||||| |||||||| |||||| | Sbjct 7159 ACGCCTACTTTTTGGTATTCTCCAACTTTTTTTTCAAAAAAGTTAGTTTTACCCTCCGTG 7218 Query 132655 GAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATC-AG 132713 || |||| |||||||||| || || ||| || || || ||| | | | | || Sbjct 7219 GATATGATATTCATAAAATCAAATGGATTGCTTGAATTATAAA-CTTTTTCACAACCTAG 7277 Query 132714 GTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAG 132773 ||| | | ||||| || || || || || || || ||| | || ||| || | Sbjct 7278 TTCGTTCAATAATCTGTCAGCGACAAATTCAATATACTGACTCATAGATTTGCAGTTCAT 7337 Query 132774 TCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTC 132833 ||| | | | || |||| || ||||| ||||| ||||||||| | |||||||| Sbjct 7338 TCCTATTAAGCTAACAGGCAAGGCATCGGTAAGAAACTCTTGCTCGATTTCAACCGCGTC 7397 Query 132834 GGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAA 132893 | | || || | || | ||| ||| || | || || | || Sbjct 7398 GCAAATAATATCGACGATTCGAGATTTCGACGGTTTTTGTACAATATAAGAAAATAATAA 7457 Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||||||||| || ||||||| || || || | ||| || | ||| ||| |||||| | Sbjct 7458 GCAAGCAAATTCATAATGCAATCCTTCATCGCGGGATATTAATTCATTGGAGAAAGTTAG 7517 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||||| || || | ||||| | |||||| || | || || || || || ||||| Sbjct 7518 ACCCGGCATAAGTCCTCTCTTTTTCAACCAAAAAATTGAAGCAAAGCTTCCGGAGAAGAA 7577 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 | || ||||| || |||||||| || | ||||| ||||| || || ||||| ||| Sbjct 7578 AATTCCTTCGACTGCAGCGAAAGCTACTAAACGCTCACCGAAGGTCGCCTCTTTACTGCT 7637 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 |||||| |||| ||||| | || |||| ||||| || | ||||| || || || Sbjct 7638 GATCCATTGCAGGGCCCAGTTAGCTTTTTTGGCTACGCAAGGTAGTGTTTCTATCGCATT 7697 Query 133134 CAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACAT 133193 || ||| |||||||| || | | | || || || || || | ||||| Sbjct 7698 GAATAAAAATTCTTTCTCTTTCGGGTCGCTGATATACGTTTCAATAAGCATGCTGTACAT 7757 Query 133194 TTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCAC 133253 ||| || | ||||| || || |||||||| |||||||| ||||| || || || Sbjct 7758 TTCGCTATGAATATTCTCAATTGCAATTTGAAAACCGTAAAAACACCGGGCTTCAGTTAC 7817 Query 133254 CTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGC 133313 || || |||||| ||||| || ||||||||||| || ||||| || ||| || || Sbjct 7818 TTGAACCTCTTGACTAAAACGTTCCACCAGATTTTCATTAACGATTCCATCGGATGCAGC 7877 Query 133314 GAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTC 133373 |||||| |||| |||| ||||| ||||| | ||||| ||| | || | ||| | Sbjct 7878 GAAAAATGCCAAGACGTATTTGATAAAATGTCTCTCGTCATCGGTTAATTTATTCCAATG 7937 Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433 | || | || | || || || ||| ||||||||||| || ||||||| ||| Sbjct 7938 ATCTATATCTCTAGATAAATCTACTTCTTCGGTTGTCCAAAACGAGGCTTCGGCTTGTTT 7997 Query 133434 GTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 ||| || ||| || || | ||||| ||| || |||| ||||| || ||| ||||| Sbjct 7998 GTATTTAGCCCAAATATCGGGATATTCTATTGGGAAAACAACAAATCGTTTGGGATTTTC 8057 >seq9911 Length=12084 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| | || || |||||||| || | || || ||| | || Sbjct 5718 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCC 5659 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| | |||| |||||| | ||||| || || || || | ||||| Sbjct 5658 GATACAATTGAAAACG-TAAAAGCAAAAATTCAAGACAAGGAAGGCATCCCACCAGACCA 5600 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| || |||| || | || || | |||||||| Sbjct 5599 ACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGCCGTACATTGTCTGACTACAA 5540 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||||||||||| ||||| ||||| || Sbjct 5539 TATCCAAAAGGAATCTACTCTCCATTTGGTGCTTCGTTTAAGAGGTGG 5492 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || |||||||| || | || || ||| | || Sbjct 5982 ATGCAAATTTTTGTGAAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCC 5923 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| | |||| |||||| | ||||| || || || || | ||||| Sbjct 5922 GATACAATTGAAAACG-TAAAAGCAAAAATTCAAGACAAGGAAGGCATCCCACCAGACCA 5864 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| || |||| || | || || | ||||| || Sbjct 5863 ACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACATTGTCTGACTATAA 5804 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||||||||||| ||||| ||||| || Sbjct 5803 TATCCAAAAGGAATCTACTCTCCATTTGGTGCTTCGTTTAAGAGGTGG 5756 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || || || || ||||| ||||| | || || || | | Sbjct 4350 ATGCAAATATTTGTTAAGACCCTTACTGGGAAAACTATCACATTGGAAGTAGAACCTTCA 4291 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | || ||||| |||||| ||||| | || ||||| || ||||| | || || Sbjct 4290 GATACAATTGAAAACG-TTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCAGATCA 4232 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || ||||| |||| || | ||| || || || ||||| Sbjct 4231 GCAGCGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGGCGAACTCTTTCAGATTACAA 4172 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 || ||||||||| | || || |||||||| || || || Sbjct 4171 TATTCAAAAGGAATCTACCCTACATTTGGTACTTCGCTT 4133 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || || |||||||| | || || || | | Sbjct 5262 ATGCAAATTTTTGTTAAAACTTTAACTGGAAAGACCATCACTTTAGAAGTTGAACCATCT 5203 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| || |||| || ||||| || ||||| | || ||| Sbjct 5202 GATACCATTGAAAATGTAAAAGCTAAGATCCAGGATAAAGAAGGTATTCCACCTGATCAA 5143 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||| || ||||| | || || | || ||||| || || ||| Sbjct 5142 CAACGACTAATATTCGCTGGTAAACAATTAGAAGATGGTCGTACCCTTTCAGATTATAAC 5083 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || ||||| || | || ||||| || || Sbjct 5082 ATCCAAAAGGAATCTACCCTTCATTTAGTATTACGATTGAGGGGTGG 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500007711715200