Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1220 441 8e-119 seq9764 123 3e-23 >seq1220 Length=9943 Score = 441 bits (488), Expect = 8e-119 Identities = 651/919 (71%), Gaps = 10/919 (1%) Strand=Plus/Plus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 || || | |||||| ||||| ||||| |||||||||| || |||||||| ||||| Sbjct 7159 ACGCCTACTTTTTGGTATTCTCCAACTTTTTTTTCAAAAAAGTTAGTTTTACCCTCCGTG 7218 Query 18721 GATAT-ACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA 18779 ||||| | |||| ||||||||||||||||| || |||||| | ||||| | |||| Sbjct 7219 GATATGATATTC-ATAAAATCAAATGGATTGCTTGAATTATAAACTTTTTCACAACCTAG 7277 Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCAT 18839 ||| | || ||| || || ||||||| |||||| |||| | || ||||| Sbjct 7278 TTCGTTCAATAATCTGTCAGCGACAAATTCAATATACTGACTCATAGATTTGCAGTTCAT 7337 Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899 ||||||||| ||||||| | ||||| |||||||| ||||| || || | || || || Sbjct 7338 TCCTATTAAGCTAACAGGCAAGGCATCGGTAAGAAACTCTTGCTCGATTTCAACCGCGTC 7397 Query 18900 TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTAT----AGAAGATGTTTAAACA 18955 | |||||| || | || | ||| || ||| | | || || ||| | Sbjct 7398 GCAAATAATATCGACGATTCGAG----ATTTCGACGGTTTTTGTACAATATAAGAAAATA 7453 Query 18956 TCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATG 19015 || || ||||| ||| |||| | ||| || || | ||| |||||||| || || | Sbjct 7454 ATAAGCAAGCAAATTCATAATGCAATCCTTCATCGCGGGATATTAATTCATTGGAGAAAG 7513 Query 19016 TTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAA 19075 ||| ||| ||||| |||||||| ||||| ||||| || || |||||||| ||| || | Sbjct 7514 TTAGACCCGGCATAAGTCCTCTCTTTTTCAACCAAAAAATTGAAGCAAAGCTTCCGGAGA 7573 Query 19076 AGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTAT 19135 |||| || ||||| ||||| || ||||| |||| | || || | | || || ||| Sbjct 7574 AGAAAATTCCTTCGACTGCAGCGAAAGCTACTAAACGCTCACCGAAGGTCGCCTCTTTAC 7633 Query 19136 TATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 | ||||||| ||| ||||| | ||| || || ||| || || | ||| ||||| | Sbjct 7634 TGCTGATCCATTGCAGGGCCCAGTTAGCTTTTTTGGCTACGCAAGGTAGTGTTTCTATCG 7693 Query 19196 AATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGT 19255 ||| |||| | | ||| | | || | | ||| | || || | | |||| Sbjct 7694 CATTGAATAAAAATTCTTTCTCTTTCGGGTCGCTGATATACGTTTCAATAAGCATGCTGT 7753 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 ||||||| ||||||||| || || || || ||||| ||||||||||| | ||||| | Sbjct 7754 ACATTTCGCTATGAATATTCTCAATTGCAATTTGAAAACCGTAAAAACACCGGGCTTCAG 7813 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 ||| || || || || ||| | ||| |||| |||||||||||| |||||||| | Sbjct 7814 TTACTTGAACCTCTTGACTAAAACGTTCCACCAGATTTTCATTAACGATTCCATCGGATG 7873 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCC 19435 | || |||||||| || || | ||| ||||||||| | || || ||||||| |||||| Sbjct 7874 CAGCGAAAAATGCCAAGACGTATTTGATAAAATGTCTCTCGTCATCGGTTAATTTATTCC 7933 Query 19436 AATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTT 19495 ||| || |||||| ||||||||||||||||||| ||||||||| || || || |||| Sbjct 7934 AATGATCTATATCTCTAGATAAATCTACTTCTTCGGTTGTCCAAAACGAGGCTTCGGCTT 7993 Query 19496 TTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTAT 19555 ||| || | ||| ||||| |||||| ||| || || | |||||||| || || Sbjct 7994 GTTTGTATTTAGCCCAAATATCGGGATATTCTATTGGGAAAACAACAAATCGTTTGGGAT 8053 Query 19556 TTTCTTTAAGAATAGGTTC 19574 |||||||||||| ||||| Sbjct 8054 TTTCTTTAAGAAGTGGTTC 8072 >seq9764 Length=88291 Score = 123 bits (136), Expect = 3e-23 Identities = 185/260 (71%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 ||||||| | || ||||||||||| || ||| |||||||||| | |||||| Sbjct 25826 TCATAAACAAGTCGGGTATCCAAAGGGCATAAAACAAATCCCTAGCACGCGCTTCTTCGA 25885 Query 48271 TGCCACTATTCCT-TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 |||| ||||| | || || ||||||||| |||| ||||| || ||||| || || || Sbjct 25886 TGCCGGTATTCTTCTTCAAATTCAAGAAA-TCCAAGATATCGGCGTGCCAGGGCTCCAAG 25944 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 || || || | | || || | || || || |||||||| | || | || ||||| Sbjct 25945 TAAATGGCGAAAGCTCCCGGCCTCTTGTTTCCACCTTGATCAACGTAACGCGCCGTATTA 26004 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 || |||| |||| ||| || || | ||| || |||| || || || || | ||||||| Sbjct 26005 TTGAAAACCCTTAGCATCGGCACCAAACCGTTGGATACGCCGTTCGTGCCGGCAATATAA 26064 Query 48450 CTTCCACTAGCTCTTATATT 48469 |||| | ||||||||||| Sbjct 26065 GTTCCTTTCGCTCTTATATT 26084 Score = 111 bits (122), Expect = 2e-19 Identities = 356/551 (65%), Gaps = 19/551 (3%) Strand=Plus/Plus Query 47004 GCTGATTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAA 47063 |||| ||| |||| || ||||||||| || ||||| |||||| |||| || |||||| Sbjct 27330 GCTGGTTTCGTTCTTAGATAATACATTCCCGTCTTCAAACCTTTCTTCCACCCGTAGAAA 27389 Query 47064 TGCATACTAGTTAATTTAGAA-----TAACTAGG-TTCTGAAATATGAATATTAAGAGAT 47117 || || | | ||| ||| |||||||| |||| | || | ||| || || Sbjct 27390 TGGAT-CGATGTAA----GAACGCCGTAACTAGGCTTCTCGACG-TGTAGATTCAGCGAC 27443 Query 47118 TGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGT 47177 ||||||||||| || || || || | ||| || || | | ||||||| | | | Sbjct 27444 TGACTCTGATCGATGAAAGCGCCACGATCGGCCGCTTGGTTAATAATAACCTTATTAGAG 27503 Query 47178 ATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATT-----AGTATTTT 47232 || |||||||| ||||| || || | || || || || || | || | |||| | Sbjct 27504 ATTTCCCATACGGTTTTGTAGATCTTCTTGATATCATCCGGTA--TTCCCGGAATATTCT 27561 Query 47233 GAATAGATCCTCCgttttctataattttgttttttaattcatttgaccaaagttttcgtt 47292 | || || || | || | | || | || || | || | ||| || | || | Sbjct 27562 GTATCGAACCACAATTGGCGAGGATCTGATTCTTCATGTCGTCGTCCCAGAGATCTCTAT 27621 Query 47293 cagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTAC 47352 | || | || ||||| ||||||| | || ||||||||||| | || | | Sbjct 27622 CGGTAAGATCGCGCAACAGATGGTGATTAACGACCTGGAATTCTCCAGACAAGACGCGTC 27681 Query 47353 GGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAG 47412 | | || || || || || ||||| | ||||| |||||||| || |||||||| | Sbjct 27682 TGGTGTAGATGTTCGAAGTGTACGGTTCAAAGGATTCGTTATTTCCTAAGATTTGAGCCG 27741 Query 47413 TTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCT 47472 | || ||||| ||||| | ||| | | ||| ||||||||| |||| ||| |||| Sbjct 27742 TCGAAGCTGTCGGCATAGGTGCTAGAAGTAAAGAATTTCTTACACCATGTTTAGCGATCT 27801 Query 47473 NNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATT 47532 |||||||||| ||||||| ||| || ||||| | ||| |||| Sbjct 27802 TCGCTTTTAATGCGCTCCAATCCCATAGATCTGTTGGCGTTACGTTCCACATATCGTATT 27861 Query 47533 GAAGAATTCCT 47543 | | ||| ||| Sbjct 27862 GTAAAATACCT 27872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561923268964200