Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13]
26,405 sequences; 423,765,647 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq9911 161 8e-35
seq22504 100 2e-16
>seq9911
Length=12084
Score = 161 bits (178), Expect = 8e-35
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 48555 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCG 48614
||||||||||| || ||| |||||| ||||||||||||||||||||| | ||| | ||
Sbjct 5999 AACACCAAATGAAGTGTGGACTCTTTCTGAATATTGTAATCAGATAGAGTGCGACCATCT 6058
Query 48615 TCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCG 48674
||||| ||||| |||||||| |||| |||||||||||| | ||||| || || |||||
Sbjct 6059 TCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATACCTTCTTTGTCC 6118
Query 48675 CTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTT 48734
||||| ||||||| | | | ||||| | ||||| |||| ||||| |||
Sbjct 6119 TGGATCTTAGCTTTTACATTCTCGATGGTGTCTGAAGGTTCCACTTCCAATGTAATTGTT 6178
Query 48735 TTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || ||||| || ||||| ||||||||
Sbjct 6179 TTACCAGTTAAAGTCTTCACAAAGATCTGCAT 6210
Score = 125 bits (138), Expect = 5e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || |||| | ||| ||||||||||| ||| ||||| ||||| || |||||||||
Sbjct 4580 CCTCCTCTTAATCTCAATACCAAATGTAGAGTGGATTCTTTCTGAATGTTATAATCAGAT 4639
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | | ||| | || |||||||| ||||| ||||| || | ||||||||||| | ||
Sbjct 4640 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGAGGT 4699
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || || ||||| ||||| ||| || | | || || || | |||||
Sbjct 4700 ATTCCTTCTTTGTCTTGGATCTTAGCTTTGGCATTCTCGATAGTATCAGAAGGTTCCACT 4759
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| || |||||||| | |||||| |||||||| |||||
Sbjct 4760 TCCAATGTAATGGTCTTTCCCGTAAGAGTTTTCACAAAAATTTGCAT 4806
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || | ||| || |||| || || || || ||||||||||||||||| |||
Sbjct 4808 CCTCCTCTCAACCGTAATACCAGGTGAAGAGTTGATTCCTTTTGAATATTGTAATCTGAT 4867
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | ||| | || ||||| ||||| || |||||||||| || |||||||| | ||
Sbjct 4868 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAATATCAAACGTTGTTGATCGGGAGGG 4927
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| ||||||| ||| ||| | | | || | | |||||
Sbjct 4928 ATTCCTTCCTTGTCTTGAATCTTTGCTTTCACATTTTCTATGGTATCAGCTGGTTCCACT 4987
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | ||||| || || || || |||||||| ||||||||||||||
Sbjct 4988 TCAAGTGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATCTGCAT 5034
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || |||| || | ||||||||| || || || ||||| |||||||| |||||
Sbjct 5492 CCACCTCTTAAACGAAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTGTAGTCAGAC 5551
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | || | || ||||| ||||| || || || || | || ||||| || | ||
Sbjct 5552 AATGTACGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGG 5611
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||| |||||||| ||| ||| |||||| | | | || || | ||| ||
Sbjct 5612 ATGCCTTCCTTGTCTTGAATTTTTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAACT 5671
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| |||||||| ||||| |||||||||||||| |||||
Sbjct 5672 TCCAATGTAATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 5718
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||||||||| || || ||||||||||||||||| || ||| |||| | || |||
Sbjct 4142 ACCAAATGTAGGGTAGATTCCTTTTGAATATTGTAATCTGAAAGAGTTCGCCCATCTTCC 4201
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
|| || || || ||||| |||| ||||| ||||| | |||| || || || || |
Sbjct 4202 AATTGTTTTCCTGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATCCTGA 4261
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| || ||| || | | | ||||| | || || |||| || || |||||
Sbjct 4262 ATTTTAGCTTTAACGTTTTCAATTGTATCTGAAGGTTCTACTTCCAATGTGATAGTTTTC 4321
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || | || || ||||| || |||||
Sbjct 4322 CCAGTAAGGGTCTTAACAAATATTTGCAT 4350
>seq22504
Length=90246
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| ||||| | ||||||||||| || | ||| || || || ||||| ||||| |||
Sbjct 25758 CCACCCCTCAAACGCAACACCAAGTGCAAAGTGGATTCCTTCTGGATATTATAATCCGAT 25699
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | ||| |||| |||||||| ||||| || ||||| || || || ||||| | ||
Sbjct 25698 AGAGTACGACCGTCTTCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGG 25639
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| ||| || |||||| | | | || || | || |||
Sbjct 25638 ATACCTTCCTTGTCTTGAATTTTAGCCTTTACATTTTCGATCGTATCGGAAGGTTCAACC 25579
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769
|| | || || ||||| || || | ||||| || ||||| ||||| ||
Sbjct 25578 TCGAGGGTTATTGTTTTCCCTGTAAGTGTTTTCACGAAAATTTGCATTGT 25529
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380815010113815
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |