Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1220 318 9e-82 seq9911 156 6e-33 >seq1220 Length=9943 Score = 318 bits (352), Expect = 9e-82 Identities = 613/901 (68%), Gaps = 17/901 (2%) Strand=Plus/Plus Query 17862 CTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTA 17921 |||||| ||||||||| |||||||| || || || || || || || ||| ||||| | Sbjct 7166 CTTTTTGGTATTCTCCAACTTTTTTTTCAAAAAAGTTAGTTTTACCCTCCGTGGATATGA 7225 Query 17922 AATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATA 17981 ||||||||||||||||||||| | | |||||| |||||| || ||||| | Sbjct 7226 TATTCATAAAATCAAATGGATTGCTTGAATTATAAACTTTTTCACAACCTAGTTCGTTCA 7285 Query 17982 ATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTA 18041 ||||||| || || |||||||| | ||| || ||| | | ||| ||||| |||| || Sbjct 7286 ATAATCTGTCAGCGACAAATTCAATATACTGACTCATAGATTTGCAGTTCATTCCTATTA 7345 Query 18042 GTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTA 18101 || | ||| | ||||| ||| ||| |||| ||| || ||||| | || || | Sbjct 7346 AGCTAACAGGCAAGGCATCGGTAAGAAACTCTTGCTCGATTTCAACCGCGTCGCAAATAA 7405 Query 18102 TGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACG 18161 | | | | | |||||| | | ||| | | || || | || ||||||| || | Sbjct 7406 TATCGACGATTCGAGATTTCGACGGTTTTTGTACAAT---ATAAGAAAATAATAAGCAAG 7462 Query 18162 CAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGG 18221 |||| ||| || || |||||||| | |||||||||||| || || |||| || | Sbjct 7463 CAAATTCATAATGCAATCCTTCATCGCGGGATATTAATTCATTGGAGAAAGTTAGACCCG 7522 Query 18222 GCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATAC 18281 |||| | ||||| ||||| | |||||| || || || || || | || ||||| || | Sbjct 7523 GCATAAGTCCTCTCTTTTTCAACCAAAAAATTGAAGCAAAGCTTCCGGAGAAGAAAATTC 7582 Query 18282 CCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTG---TATTTATTGCTCAGT 18337 | || || ||| ||||| |||| ||| | ||| | || | | |||| |||| | Sbjct 7583 CTTCGACTGCA-GCGAAAGCTACTAAACGCTCACCGAAGGTCGCCTCTTTACTGCTGA-- 7639 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTA 18397 |||||| | ||||| | ||| | || |||| | ||||| ||||| Sbjct 7640 -TCCATTGCAGGGCCCAGTTAGCTTTTTTGGCTACGCAAGGTAGTGTTTCTATCGCATTG 7698 Query 18398 AACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATT 18457 || ||| ||||| ||||| | || | ||||| || || || | || |||||| Sbjct 7699 AATAAAAATTCTTTCTCTTTCGGGTCGCTGATATACGTTTCAATAAGCATGCTGTACATT 7758 Query 18458 TCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT 18517 || ||| || | || || || || ||||||| ||||| | | || || | | Sbjct 7759 TCGCTATGAATATTCTCAATTGCAATTTGAAAACCGTAAAAACACCGGGCTTCAGTTACT 7818 Query 18518 TGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCG 18577 |||| ||| | ||| | ||| |||| ||| |||||||| || || || | | ||| Sbjct 7819 TGAACCTCTTGACTAAAACGTTCCACCAGATTTTCATTAACGATTCCATCGGATGCAGCG 7878 Query 18578 AAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCA 18637 ||||||||||| || ||||| || |||||| | || | ||| | | || ||||| | | Sbjct 7879 AAAAATGCCAAGACGTATTTGATAAAATGTCTCTCGTCATCGGTTAATTTATTCCAATGA 7938 Query 18638 TCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTG 18697 ||||||||| | |||| ||| |||||||| | ||||||||| || | |||||| |||||| Sbjct 7939 TCTATATCTCTAGATAAATCTACTTCTTCGGTTGTCCAAAACGAGGCTTCGGCTTGTTTG 7998 Query 18698 TACATTTTA---TAAATATCTTCATGTTGTATAGGAAATAATATATATCGTTTATAATTT 18754 || |||| ||||||| || || ||| || || | | | ||||||| |||| Sbjct 7999 TA---TTTAGCCCAAATATCGGGATATTCTATTGGGAAAACAACAAATCGTTTGGGATTT 8055 Query 18755 T 18755 | Sbjct 8056 T 8056 >seq9911 Length=12084 Score = 156 bits (172), Expect = 6e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | ||||||||||| |||||||||||||| ||| || Sbjct 4579 AATGCAAATCTTTGTAAAAACTCTTACTGGAAAAACAATTACATTAGAAGTGGAACCATC 4520 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||| ||| ||||| ||||| |||||||| ||||||||||| || Sbjct 4519 GGACACCATTGAAAACGTTAAAGCAAAAATCCAAGACAAAGAAGGTATACCTCCAGACCA 4460 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||||| |||||| || || | || ||| | | || | ||||||||||| Sbjct 4459 GCAACGTTTGATTTTTGCCGGGAAACAATTGGAGGATGGCCGCACGCTTTCAGATTATAA 4400 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| ||||| | || || || ||||| || |||| ||||| ||| Sbjct 4399 TATCCAAAAAGAATCTACACTGCACTTAGTCTTGCGATTGAGAGGAGGT 4351 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| | || ||||| || |||||||| ||||| ||| ||| Sbjct 4807 AATGCAAATTTTTGTGAAAACTCTTACGGGAAAGACCATTACATTGGAAGTGGAACCTTC 4748 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || | ||| ||| || ||||| |||||||| ||||||||||| || Sbjct 4747 TGATACTATCGAGAATGCCAAAGCTAAGATCCAAGACAAAGAAGGAATACCTCCAGATCA 4688 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | || |||| ||| ||||| ||| | |||||| | |||||||| |||||||| Sbjct 4687 ACAGCGTTTAATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTATCTGATTATAA 4628 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || || ||||| || || ||||||||||| || Sbjct 4627 CATTCAGAAAGAATCCACTCTACATTTGGTATTGAGATTAAGAGGAGG 4580 Score = 149 bits (164), Expect = 9e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 || |||||| || ||| | || || || ||||| ||||| |||||||| ||||| ||| Sbjct 6214 TAGAATGCAGATCTTTGTGAAGACTTTAACTGGTAAAACAATTACATTGGAAGTGGAACC 6155 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||| || | || || || ||| ||| || || || |||||||| || || ||||| Sbjct 6154 TTCAGACACCATCGAGAATGTAAAAGCTAAGATCCAGGACAAAGAAGGTATTCCCCCAGA 6095 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 ||||| ||||||| | |||||| ||||| | |||||| | ||| |||| ||||| Sbjct 6094 TCAACAGCGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGTCGCACTCTATCTGATTA 6035 Query 155999 TAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||| |||||| | || |||||||| ||||||||||| ||||| ||| Sbjct 6034 CAATATTCAGAAAGAGTCCACACTTCATTTGGTGTTAAGATTGAGAGGAGGT 5983 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || ||||| ||||| || || ||||| || ||||| || ||| Sbjct 5490 ATGCAGATATTCGTCAAGACATTAACTGGGAAGACGATTACTTTGGAAGTGGAGCCATCT 5431 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| ||||| |||||||||||||| || || ||||| ||| Sbjct 5430 GATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCAGACCAA 5371 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| ||||| || | |||||| | ||| | || |||||||| Sbjct 5370 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAAC 5311 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| |||| || ||||| || ||| |||| ||||| ||| Sbjct 5310 ATCCAAAAAGAGTCGACCCTCCATTTGGTATTACGATTGAGAGGTGGT 5263 Score = 143 bits (158), Expect = 4e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| |||||||||||||| |||||||| ||||| || || Sbjct 5982 ATGCAAATTTTTGTGAAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCC 5923 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||||| ||||| || |||||||| || ||||| ||| Sbjct 5922 GATACAATTGAAAACGTAAAAGCAAAAATTCAAGACAAGGAAGGCATCCCACCAGACCAA 5863 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | || || ||||| | |||||| | |||| || || || |||| Sbjct 5862 CAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACATTGTCTGACTATA-- 5805 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||||||| || | || || ||||| ||| | | |||||||| ||| Sbjct 5804 ATATCCAAAAGGAATCTACTCTCCATTTGGTGCTTCGTTTAAGAGGTGGT 5755 Score = 138 bits (152), Expect = 2e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| || | ||||| |||||||| ||||| ||||| ||| ||| Sbjct 4350 ATGCAAATATTTGTTAAGACCCTTACTGGGAAAACTATCACATTGGAAGTAGAACCTTCA 4291 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| |||||| || ||||||||||| || |||||||| || Sbjct 4290 GATACAATTGAAAACGTTAAAGCTAAAATTCAGGATAAAGAAGGTATTCCTCCAGATCAG 4231 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || || || | |||||| ||||| | |||||||| ||| Sbjct 4230 CAGCGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGGCGAACTCTTTCAGATTACAAT 4171 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| || | || || ||||| || Sbjct 4170 AT-TCAAAAGGAATCTACCCTACATTTGGT 4142 Score = 134 bits (148), Expect = 2e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| || |||||||| || || || |||||||| ||| ||| Sbjct 5262 ATGCAAATTTTTGTTAAAACTTTAACTGGAAAGACCATCACTTTAGAAGTTGAACCATCT 5203 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| ||| || || ||||||||||| || || || || ||| Sbjct 5202 GATACCATTGAAAATGTAAAAGCTAAGATCCAGGATAAAGAAGGTATTCCACCTGATCAA 5143 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| || | || | || ||||| || | |||||| | || | ||||||||||| Sbjct 5142 CAACGACTAATATTCGCTGGTAAACAATTAGAAGATGGTCGTACCCTTTCAGATTATAAC 5083 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| || | || ||||||||||| ||| |||| || || ||| Sbjct 5082 AT--CCAAAAGGAATCTACCCTTCATTTAGTATTACGATTGAGGGGTGGT 5035 Score = 134 bits (148), Expect = 2e-26 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| |||||||||||||| |||||||| ||||| || || Sbjct 5718 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCC 5659 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||||| ||||| || |||||||| || ||||| ||| Sbjct 5658 GATACAATTGAAAACGTAAAAGCAAAAATTCAAGACAAGGAAGGCATCCCACCAGACCAA 5599 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | || || ||||| | |||||| | | || || || || || | Sbjct 5598 CAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGCCGTACATTGTCTGACTACA-- 5541 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||||||||| || | || || ||||| ||| | | |||||||| ||| Sbjct 5540 ATATCCAAAAGGAATCTACTCTCCATTTGGTGCTTCGTTTAAGAGGTGGT 5491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731630436498000