Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq19917 111 2e-18 seq19472 111 2e-18 >seq19917 Length=26674 Score = 111 bits (122), Expect = 2e-18 Identities = 173/245 (71%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||| || ||||| ||||||||| | || ||||| ||| | | Sbjct 2998 TGTACTTGGTCACGGCCTTCGTGCCCTCGCTAACGGCGTGCTTTGCAAGTTCACCGGGAA 2939 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT----TA 1485585 | || || |||||||| ||||||||||| | ||| || || ||| | || Sbjct 2938 GCAATAGACGAACGGCGGTTTGGATCTCGCGACTCGTAATC--GTCGCCCTTTTATTATA 2881 Query 1485586 GTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 || ||| || ||| ||| || | |||| | |||| ||||| || || || | Sbjct 2880 ATGAGCG--AGACGGGAGGCTTCCGCTGCGATCCTCTCGAAGATGTCATTAACGAAACTG 2823 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||| ||||| ||| |||| ||||| ||| ||||| || ||||| |||||| Sbjct 2822 TTCATGATGCTCATCGCCTTGCTGGATATGCCGGTGTCCGGGTGAACTTGCTTCAGCACC 2763 Query 1485706 TTGTA 1485710 ||||| Sbjct 2762 TTGTA 2758 Score = 111 bits (122), Expect = 2e-18 Identities = 173/245 (71%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||| || ||||| ||||||||| | || ||||| ||| | | Sbjct 5453 TGTACTTGGTCACGGCCTTCGTGCCCTCGCTAACGGCGTGCTTTGCAAGTTCACCGGGAA 5394 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT----TA 1485585 | || || |||||||| ||||||||||| | ||| || || ||| | || Sbjct 5393 GCAATAGACGAACGGCGGTTTGGATCTCGCGACTCGTAATC--GTCGCCCTTTTATTATA 5336 Query 1485586 GTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 || ||| || ||| ||| || | |||| | |||| ||||| || || || | Sbjct 5335 ATGAGCG--AGACGGGAGGCTTCCGCTGCGATCCTCTCGAAGATGTCATTAACGAAACTG 5278 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||| ||||| ||| |||| ||||| ||| ||||| || ||||| |||||| Sbjct 5277 TTCATGATGCTCATCGCCTTGCTGGATATGCCGGTGTCCGGGTGAACTTGCTTCAGCACC 5218 Query 1485706 TTGTA 1485710 ||||| Sbjct 5217 TTGTA 5213 Score = 105 bits (116), Expect = 1e-16 Identities = 173/246 (70%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||| || ||||| ||||||||| | || ||||| ||| | | Sbjct 8444 TGTACTTGGTCACGGCCTTCGTGCCCTCGCTAACGGCGTGCTTTGCAAGTTCACCGGGAA 8385 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT----TA 1485585 | || || |||||||| ||||||||||| | ||| || || ||| | || Sbjct 8384 GCAATAGACGAACGGCGGTTTGGATCTCGCGACTCGTAATC--GTCGCCCTTTTATTATA 8327 Query 1485586 GTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCG-ATCATGTCGTTGACAAACGA 1485644 || ||| || ||| ||| || | |||| | ||| | ||||| || || || Sbjct 8326 ATGAGCG--AGACGGGAGGCTTCCGCTGCGATCCTCTCGAAGGATGTCATTAACGAAACT 8269 Query 1485645 GTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| ||||| ||| |||| ||||| ||| ||||| || ||||| ||||| Sbjct 8268 GTTCATGATGCTCATCGCCTTGCTGGATATGCCGGTGTCCGGGTGAACTTGCTTCAGCAC 8209 Query 1485705 CTTGTA 1485710 |||||| Sbjct 8208 CTTGTA 8203 >seq19472 Length=7445 Score = 111 bits (122), Expect = 2e-18 Identities = 173/245 (71%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| |||||||| || ||||| ||||||||| | || ||||| ||| | | Sbjct 2216 TGTACTTGGTCACGGCCTTCGTGCCCTCGCTAACGGCGTGCTTTGCAAGTTCACCGGGAA 2157 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT----TA 1485585 | || || |||||||| ||||||||||| | ||| || || ||| | || Sbjct 2156 GCAATAGACGAACGGCGGTTTGGATCTCGCGACTCGTAATC--GTCGCCCTTTTATTATA 2099 Query 1485586 GTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAG 1485645 || ||| || ||| ||| || | |||| | |||| ||||| || || || | Sbjct 2098 ATGAGCG--AGACGGGAGGCTTCCGCTGCGATCCTCTCGAAGATGTCATTAACGAAACTG 2041 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||||||| ||||| ||| |||| ||||| ||| ||||| || ||||| |||||| Sbjct 2040 TTCATGATGCTCATCGCCTTGCTGGATATGCCGGTGTCCGGGTGAACTTGCTTCAGCACC 1981 Query 1485706 TTGTA 1485710 ||||| Sbjct 1980 TTGTA 1976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913437579716795