Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13]
26,405 sequences; 423,765,647 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq9764 150 2e-31
seq22544 105 6e-18
seq22504 100 3e-16
seq9911 87.8 2e-12
>seq9764
Length=88291
Score = 150 bits (166), Expect = 2e-31
Identities = 332/484 (69%), Gaps = 28/484 (6%)
Strand=Plus/Plus
Query 148515 TACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTC 148574
|||||||| | | || | |||| ||| || || ||||| | ||| | || || | ||||
Sbjct 25022 TACGGTCCTTCCACCTCGGCCAATTCACAACTAGCCTCCAAAGCGGCATAATACAACGTC 25081
Query 148575 TCGGCAATTTGCCTGTTGAGCA-GCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCG 148633
||| ||| ||| ||| | || ||| || |||||| || |||||||| | || |
Sbjct 25082 TCGAAAATCTGCAAGTTTAACATGCGA-GCTTCCTCGCTATCATACGGCATTCTCAACAA 25140
Query 148634 CACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGA 148693
| ||| || |||||||||||||||| || | || || || | ||| | || || ||
Sbjct 25141 AATAAAAGCATCGGCAAGGCCCTGTATTCCGATACCGATCGGTCTATGTCTCATATTCGA 25200
Query 148694 GAGGCGCGC-GCTCTCGAG---CGGATAGTGGTTGCGGTCGATGATCTTGT-CAAGATTG 148748
|| ||| ||| | |||||| | ||| ||| |||||||||| |||| |||
Sbjct 25201 ----CGTTTTGCTTTCGGGTATCGGATAATAGTTAATGTCTATGATCTTGTTCAAG-TTG 25255
Query 148749 CGCACCACCACCTTTGTAA--TTCTGCGCAGCAATTCAAAATCGTACTTGTC---ATC-- 148801
||| || | || || | |||| | || ||| ||||||||| | | |||
Sbjct 25256 CGCGTGACGATTTTCGTGACGTTCTTCA-AGTT-TTCGAAATCGTACGTCTTCCTATCCG 25313
Query 148802 ----TACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCG 148857
||||| ||| |||||||| || || |||||||| || || || | || ||
Sbjct 25314 GTTTTACGAA-CATA--TTCACGGCAATCGACGCTAGATTACAAACTGCAATTTCGTCTT 25370
Query 148858 GGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCT 148917
|| | |||||||||||||||| ||| | ||||| | ||||||| |||| |||||
Sbjct 25371 TGGACGTATACTCTACGATCTCGGTGCATAAGTTGCTACTTTTGATCGTTCCCAGGTTCT 25430
Query 148918 TTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCA 148977
||| ||||| || | ||||| ||||||||||| |||||||| || || |||||||
Sbjct 25431 GTTGGTTGCTTTTACGATTGCAAGCGTCCTTGTAGAGCATGTAAGGGGTACCGGTTTCCA 25490
Query 148978 CCTG 148981
| ||
Sbjct 25491 CTTG 25494
>seq22544
Length=59602
Score = 105 bits (116), Expect = 6e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 116467 GGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCC 116526
||||| ||||| |||||| | ||||| || ||||| | || ||||||||||| || |||
Sbjct 43582 GGCCTTCACGGATTCCACATTCACGAATTCGGCGATAACACCAACGGCTGCATTTCAGCC 43523
Query 116527 GGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCAC 116586
|||| ||||||||||| | | |||| ||||||| || | || | ||| ||||||
Sbjct 43522 GGCGCCCACTTCAACCCTCACAGTAAGGATCACGGCGGACCAGAAGCAGACGTACGTCAC 43463
Query 116587 GTCGGTGACCTGGGCAACATTGAGGC 116612
||||| || |||| ||||| || ||
Sbjct 43462 GTCGGCGATTTGGGGAACATCGAAGC 43437
>seq22504
Length=90246
Score = 100 bits (110), Expect = 3e-16
Identities = 145/200 (73%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521
||||| || ||||| ||||| ||||| | || | | |||| ||| || | ||| || |
Sbjct 25728 GTGGATTCCTTCTGGATATTATAATC--CGATAGAGTACGACCGTCTTCCAACTGTTTAC 25671
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-C 133580
| ||| | || || || ||||| ||||| ||||| ||||||||||| ||| ||| | |
Sbjct 25670 CAGCGAATATAAGACGTTGCTGATCGGGTGGGATACCTTCCTTGTC-TTGAATTTTAGCC 25612
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|| | | || | ||| |||| || || || |||| ||| | ||||| || || ||
Sbjct 25611 TTTACATTTTCGATCGTATCGGAAGGTTCAACCTCGAGGGTTATTGTTTTCCCTGTAAGT 25552
Query 133641 GTTTTTACGAAAATCTGCAT 133660
||||| |||||||| |||||
Sbjct 25551 GTTTTCACGAAAATTTGCAT 25532
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/190 (72%), Gaps = 7/190 (4%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
|| |||| |||||| |||||||| ||||| ||||| | || | | |||| ||| || |
Sbjct 21192 AAGTGTAAGGTGGATTCTTTCTGAATATTATAATC--CGATAGAGTACGACCGTCTTCCA 21135
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
||| || || ||| | || || || ||||| ||||| ||||| ||||||||||| |||
Sbjct 21134 ACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGGATACCTTCCTTGTC-TTGA 21076
Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||| | ||| | | || | ||| |||| || || || |||| ||| | |||||
Sbjct 21075 ATTTTAGCCTTTACATTTTCGATCGTATCGGAAGGTTCAACCTCGAGGGTTATTGTTTTC 21016
Query 133632 CCGGT-CAGA 133640
|| || ||||
Sbjct 21015 CCTGTGCAGA 21006
>seq9911
Length=12084
Score = 87.8 bits (96), Expect = 2e-12
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| ||| | || | || || ||||| || ||||||||||||||||| |||
Sbjct 5573 TGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTGTC-TTGAAT 5631
Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|||||| || | | |||| || |||| ||||| || || | || | |||||| ||
Sbjct 5632 TTTTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAACTTCCAATGTAATGGTTTTTCC 5691
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||| |||||||| ||||| |||||
Sbjct 5692 AGTCAAGGTTTTTACAAAAATTTGCAT 5718
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| || ||||| || ||||| ||||| | |||| | | | ||||| | || || ||
Sbjct 4382 GTAGATTCTTTTTGGATATTATAATCTGAAAGCGTGCGGCCA-TCCTCCAATTGTTTCCC 4440
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| |||| | || |||||||| ||||| || ||||| ||||| ||| ||||||||
Sbjct 4441 GGCAAAAATCAAACGTTGCTGGTCTGGAGGTATACCTTCTTTGTCTTGGAT-TTTTGCTT 4499
Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | |||| ||||| | || ||||| || | || | ||||| || || ||||
Sbjct 4500 TAACGTTTTCAATGGTGTCCGATGGTTCCACTTCTAATGTAATTGTTTTTCCAGTAAGAG 4559
Query 133642 TTTTTACGAAAATCTGCAT 133660
||||||| || || |||||
Sbjct 4560 TTTTTACAAAGATTTGCAT 4578
Score = 82.4 bits (90), Expect = 7e-11
Identities = 108/147 (73%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
|||||||| ||| | || | || || ||||| || ||||||||||||||||| |||
Sbjct 5837 TGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGGATGCCTTCCTTGTC-TTGAAT 5895
Query 133575 TTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633
|||||| || | | |||| || |||| ||||| || || | || | |||||| ||
Sbjct 5896 TTTTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAACTTCCAATGTAATGGTTTTTCC 5955
Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||| ||||| || ||||| |||||
Sbjct 5956 AGTCAAGGTTTTCACAAAAATTTGCAT 5982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483261240922200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |