Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq9911 107 5e-18 seq22504 87.8 4e-12 >seq9911 Length=12084 Score = 107 bits (118), Expect = 5e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||| || | || || || ||||| |||||||||||||| ||||| Sbjct 5487 CAGATATTCGTCAAGACATTAACTGGGAAGACGATTACTTTGGAAGTGGAGCCATCTGAT 5428 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| ||||| |||||| |||||||| |||||||| || || ||| || Sbjct 5427 ACTATTGAAAATGTAAAAGCAAAA-ATTCAAGATAAAGAAGGTATCCCACCAGACCAACA 5369 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | ||||| || || || || |||||||||||| | ||| | | ||||| ||| | Sbjct 5368 ACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAACAT 5309 Query 206352 CCAGAAAGAGTCTACTCTTCA 206372 ||| |||||||| || || || Sbjct 5308 CCAAAAAGAGTCGACCCTCCA 5288 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || ||||| || || |||||||||||| ||| ||| Sbjct 6207 CAGATCTTTGTGAAGACTTTAACTGGTAAAACAATTACATTGGAAGTGGAACCTTCAGAC 6148 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| ||||| ||||| || || |||||||| ||| || || || Sbjct 6147 ACCATCGAGAATGTAAAAGCTAAGATCCAGGACAAAGAAGGTATTCCCCCAGATCAACAG 6088 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| ||||| ||||| ||||||||||| | ||| | | |||||||| | Sbjct 6087 CGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGTCGCACTCTATCTGATTACAATATT 6028 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 ||||||||||| || ||||| | || || ||| Sbjct 6027 CAGAAAGAGTCCACACTTCATTTGGTGTTAAGA 5995 Score = 102 bits (112), Expect = 2e-16 Identities = 149/205 (73%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || || || |||||||||||| |||||| || |||| Sbjct 4791 AAAACTCTTACGGGAAAGACCATTACATTGGAAGTGGAACCTTCTGATACTATCGAGAAT 4732 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 | ||||| || ||| ||||| ||||||||||| || || |||| || || || Sbjct 4731 GCCAAAGCTAA-GATCCAAGACAAAGAAGGAATACCTCCAGA---TCAACAGCGTTTAAT 4676 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || || || || |||||||||||||| | ||||| | ||||| ||| | |||||||| Sbjct 4675 TTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTATCTGATTATAACATTCAGAAAGA 4616 Query 206361 GTCTACTCTTCACCTTGTTTTGAGA 206385 || ||||| || | || |||||| Sbjct 4615 ATCCACTCTACATTTGGTATTGAGA 4591 Score = 100 bits (110), Expect = 7e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || || |||||||| || || || ||| | ||| Sbjct 5703 AAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCCGATACAATTGAAAAC 5644 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| |||||| |||||||| || ||||| || || ||| ||| | | ||||| Sbjct 5643 GTAAAAGCAAAA-ATTCAAGACAAGGAAGGCATCCCACCAGACCAACAACGTTTAATCTT 5585 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| ||||||||||| | || ||| | || ||||| |||| || || || Sbjct 5584 CGCTGGCAAGCAATTGGAAGATGGCCGTACATTGTCTGACTACAATATCCAAAAGGAATC 5525 Query 206364 TACTCTTCA 206372 |||||| || Sbjct 5524 TACTCTCCA 5516 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| || || |||||||| || || || ||| | ||| Sbjct 5967 AAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCCGATACAATTGAAAAC 5908 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| |||||| |||||||| || ||||| || || ||| ||| | | ||||| Sbjct 5907 GTAAAAGCAAAA-ATTCAAGACAAGGAAGGCATCCCACCAGACCAACAACGTTTAATCTT 5849 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || ||||| ||||||||||| | || ||| | || || || |||| || || || Sbjct 5848 CGCTGGCAAGCAATTGGAAGATGGCCGAACATTGTCTGACTATAATATCCAAAAGGAATC 5789 Query 206364 TACTCTTCA 206372 |||||| || Sbjct 5788 TACTCTCCA 5780 Score = 89.7 bits (98), Expect = 1e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || || || || ||||| ||||| |||||||| ||| ||| || Sbjct 4347 CAAATATTTGTTAAGACCCTTACTGGGAAAACTATCACATTGGAAGTAGAACCTTCAGAT 4288 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| ||| ||||| || |||||||| ||| || || || Sbjct 4287 ACAATTGAAAACGTTAAAGCTAAA-ATTCAGGATAAAGAAGGTATTCCTCCAGATCAGCA 4229 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || ||||| || ||||||||||| | ||| | | |||||||| | Sbjct 4228 GCGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGGCGAACTCTTTCAGATTACAATAT 4169 Query 206352 CCAGAAAGAGTCTACTCTTCA 206372 || || || ||||| || || Sbjct 4168 TCAAAAGGAATCTACCCTACA 4148 Score = 84.2 bits (92), Expect = 5e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || || || || || | ||||||||| |||| Sbjct 5031 CAGATTTTTGTTAAAACTTTAACTGGTAAGACTATTACACTTGAAGTGGAACCAGCTGAT 4972 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || |||||||| ||||||||| || |||||||| || || || Sbjct 4971 ACCATAGAAAATGTGAAAGCAAA-GATTCAAGACAAGGAAGGAATCCCTCCCGATCAACA 4913 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || || || || ||||| ||||||||||| | ||| | | |||||||| | Sbjct 4912 ACGTTTGATATTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTATCAGATTACAATAT 4853 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 || || || || ||||||||||| || || Sbjct 4852 TCAAAAGGAATCAACTCTTCACCTGGTATT 4823 >seq22504 Length=90246 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| ||||| || || | || || ||| ||| || || ||||| Sbjct 25547 AAAACACTTACAGGGAAAACAATAACCCTCGAGGTTGAACCTTCCGATACGATCGAAAAT 25606 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || |||||||| || ||||| || || || ||| | ||||| ||| Sbjct 25607 GTAAAGGCTAAAATTCAAGACAAGGAAGGTATCCCACCCGATCAGCAACGTCTTATATTC 25666 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||||||||||| || | ||| | | ||||| || ||||||| || || Sbjct 25667 GCTGGTAAACAGTTGGAAGACGGTCGTACTCTATCGGATTATAATATCCAGAAGGAATCC 25726 Query 206365 ACTCTTCACCTTGTTTTG 206382 ||| | ||| | || ||| Sbjct 25727 ACTTTGCACTTGGTGTTG 25744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181420973404005