Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq9911 143 2e-29 seq22504 93.3 3e-14 >seq9911 Length=12084 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | ||||||||||||||| |||||||| || ||||| || || Sbjct 5756 CCACCTCTTAAACGAAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTATAGTCAGAC 5815 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||||| | ||||| | ||| || || || || |||||||| |||||||| || || Sbjct 5816 AATGTTCGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGG 5875 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||||| ||| ||| | |||||| || ||| || Sbjct 5876 ATGCCTTCCTTGTCT-TGAATTTTTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAAC 5934 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || || || |||||||||||||| ||||| Sbjct 5935 TTCCAATGTAATGGTTTTTCCAGTCAAGGTTTTCACAAAAATTTGCAT 5982 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || || ||||||||||| || ||| ||||| ||||||||||| ||| Sbjct 5264 CCACCTCTCAATCGTAATACCAAATGGAGGGTCGACTCTTTTTGGATGTTATAATCAGAA 5323 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||||||||| ||||| || ||||| |||||||| || || Sbjct 5324 AGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGTGGG 5383 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| ||||| ||||| | ||| || || |||||| Sbjct 5384 ATACCTTCTTTATCT-TGAATTTTTGCTTTTACATTTTCAATAGTATCAGATGGCTCCAC 5442 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| || || ||||| || || || || |||||||| Sbjct 5443 TTCCAAAGTAATCGTCTTCCCAGTTAATGTCTTGACGAATATCTGCAT 5490 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | ||||||||||||||| |||||||| || || || || || Sbjct 5492 CCACCTCTTAAACGAAGCACCAAATGGAGAGTAGATTCCTTTTGGATATTGTAGTCAGAC 5551 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||| || || || || |||||||| |||||||| || || Sbjct 5552 AATGTACGGCCATCTTCCAATTGCTTGCCAGCGAAGATTAAACGTTGTTGGTCTGGTGGG 5611 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||||| ||| ||| | |||||| || ||| || Sbjct 5612 ATGCCTTCCTTGTCT-TGAATTTTTGCTTTTACGTTTTCAATTGTATCGGATGGCTCAAC 5670 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || || || ||||| |||||||| ||||| Sbjct 5671 TTCCAATGTAATGGTTTTTCCAGTCAAGGTTTTTACAAAAATTTGCAT 5718 Score = 122 bits (134), Expect = 5e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || || |||| || ||||| ||||||||||| || |||||||| Sbjct 4808 CCTCCTCTCAACCGTAATACCAGGTGAAGAGTTGATTCCTTTTGAATATTGTAATCTGAT 4867 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| || || |||||||| ||||| ||||| || || || Sbjct 4868 AGAGTGCGACCATCTTCCAATTGCTTGCCAGCAAATATCAAACGTTGTTGATCGGGAGGG 4927 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||| ||||||||| |||||| ||| | | || || || | |||||| Sbjct 4928 ATTCCTTCCTTGTCTTGAATCTTTGCTTTCACATTTTCTATGGTATCAGCTGGTTCCACT 4987 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || || ||||| ||||| ||||| |||||||||||||| Sbjct 4988 TCAAGTGTAATAGTCTTACCAGTTAAAGTTTTAACAAAAATCTGCAT 5034 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 ||||||||||| || ||| ||| || ||||| || ||||| || || || || | ||| Sbjct 5999 AACACCAAATGAAGTGTGGACTCTTTCTGAATATTGTAATCAGATAGAGTGCGACCATCT 6058 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || | ||| || |||||||| || || |||||||| || || || | || || ||||| Sbjct 6059 TCCAATTGCTTGCCGGCAAAGATCAATCGCTGTTGATCTGGGGGAATACCTTCTTTGTCC 6118 Query 34615 GTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTT 34674 |||||| ||||| || |||||| |||||||||| || || ||| Sbjct 6119 TGGATCTTAGCTTTTACATTCTCGATGGTGTCTGAAGGTTCCACTTCCAATGTAATTGTT 6178 Query 34675 TTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| || |||||||| |||||||| Sbjct 6179 TTACCAGTTAAAGTCTTCACAAAGATCTGCAT 6210 Score = 114 bits (126), Expect = 8e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||||| || || || || || || ||||| || |||||||||||| Sbjct 4352 CCTCCTCTCAATCGCAAGACTAAGTGCAGTGTAGATTCTTTTTGGATATTATAATCTGAA 4411 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | |||||| |||||||| || ||||| || ||||| || || Sbjct 4412 AGCGTGCGGCCATCCTCCAATTGTTTCCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGT 4471 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCT--CTCC 34656 | || || |||||| ||| ||||| ||||||| | ||| ||||| || | ||| Sbjct 4472 ATACCTTCTTTGTCTTGGAT-TTTTGCTTTAACGTTTTCAATGGTGTC--CGATGGTTCC 4528 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | || || ||||| || || | ||||| ||||| || ||||| Sbjct 4529 ACTTCTAATGTAATTGTTTTTCCAGTAAGAGTTTTTACAAAGATTTGCAT 4578 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| |||||||| |||||| || || |||||||||||||| || Sbjct 4580 CCTCCTCTTAATCTCAATACCAAATGTAGAGTGGATTCTTTCTGAATGTTATAATCAGAT 4639 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||||| ||||| |||||||||||||| || || || Sbjct 4640 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGAGGT 4699 Query 34600 ACTCCCTCCTTGTCTGTGAT-----CTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCT 34654 | ||| || |||||| ||| |||| | || ||||| || || | Sbjct 4700 ATTCCTTCTTTGTCTTGGATCTTAGCTTTGGCATTCTCGATA-----GTATCAGAAGGTT 4754 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||||| || || || || || || | |||||||||||||| ||||| Sbjct 4755 CCACTTCCAATGTAATGGTCTTTCCCGTAAGAGTTTTCACAAAAATTTGCAT 4806 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| || || ||||||||||| || ||||||||||| |||||| | ||||| Sbjct 4142 ACCAAATGTAGGGTAGATTCCTTTTGAATATTGTAATCTGAAAGAGTTCGCCCATCTTCC 4201 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | |||||| || ||||| || |||||||| || || || || | || || || || || Sbjct 4202 AATTGTTTTCCTGCAAAGATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTATC-CTG 4260 Query 34618 ATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| | ||||||| | |||||| ||| || ||||||| || || ||||| Sbjct 4261 AATTTTAGCTTTAACGTTTTCAATTGTATCTGAAGGTTCTACTTCCAATGTGATAGTTTT 4320 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || ||||| || ||||| Sbjct 4321 CCCAGTAAGGGTCTTAACAAATATTTGCAT 4350 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 || || || ||||| || || |||||||| ||||||||||||||||| || || | Sbjct 5048 CGTAATACTAAATGAAGGGTAGATTCCTTTTGGATGTTATAATCTGAAAGGGTACGACCA 5107 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| | ||||||||| || ||||||| || ||||| || || || | || || || Sbjct 5108 TCTTCTAATTGTTTACCAGCGAATATTAGTCGTTGTTGATCAGGTGGAATACCTTCTTTA 5167 Query 34612 TCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATC 34671 || |||||| ||||| | ||| || || || ||||| | || || Sbjct 5168 TCCTGGATCTTAGCTTTTACATTTTCAATGGTATCAGATGGTTCAACTTCTAAAGTGATG 5227 Query 34672 GTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| ||||| |||||||| ||||| Sbjct 5228 GTCTTTCCAGTTAAAGTTTTAACAAAAATTTGCAT 5262 >seq22504 Length=90246 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | |||||||||||| || | |||| ||||| || || |||||||| || Sbjct 25758 CCACCCCTCAAACGCAACACCAAGTGCAAAGTGGATTCCTTCTGGATATTATAATCCGAT 25699 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | |||||||| || ||||| | ||| || || || || || Sbjct 25698 AGAGTACGACCGTCTTCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGG 25639 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | |||| | || || || || || Sbjct 25638 ATACCTTCCTTGTCT-TGAATTTTAGCCTTTACATTTTCGATCGTATCGGAAGGTTCAAC 25580 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||| ||||| || || | |||||||| ||||| ||||| Sbjct 25579 CTCGAGGGTTATTGTTTTCCCTGTAAGTGTTTTCACGAAAATTTGCAT 25532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314628316572365