Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13]
26,405 sequences; 423,765,647 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq9911 123 2e-23
seq22504 100 2e-16
>seq9911
Length=12084
Score = 123 bits (136), Expect = 2e-23
Identities = 170/232 (73%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| ||||| |||||||||||||| ||| |||||| | || || ||| ||
Sbjct 4579 AATGCAAATCTTTGTAAAAACTCTTACTGGAAAAACAATTACATTAGAAGTGGAAC-CAT 4521
Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905
|| || || | || || ||| |||||| |||||||||||| | || ||
Sbjct 4520 CGGACACCATTGAAAAC--GTTAAAGCAAAAATCCAAGACAAAGAAGGTATACCTCCAGA 4463
Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATT 27964
|||||||| || ||||||||||| ||||||||||| || | |||| |||| || ||||
Sbjct 4462 CCAGCAACGTTTGATTTTTGCCGGGAAACAATTGGAGGATGGCCGCACGCTT-TCAGATT 4404
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| || ||||||||||| || |||| || || ||||| ||| | || ||
Sbjct 4403 ATAATATCCAAAAAGAATCTACACTGCACTTAGTCTTGCGATTGAGAGGAGG 4352
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||| || || |||||||||||| ||| ||| | || || ||| |
Sbjct 4350 ATGCAAATATTTGTTAAGACCCTTACTGGGAAAACTATCACATTGGAAGTAGAACCTTCA 4291
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|| | || | || || | || | |||| | || || ||||||||| |||| ||
Sbjct 4290 GATACAATTGAAAA-CGTTAAAGCTAAAATTCAG--GATAAAGAAGGTATTCCTCCAGAT 4234
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| || || || ||||| |||||||||||||| || | || | | || ||||||
Sbjct 4233 CAGCAGCGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGGCGAACTCTTTCAGATTAC 4174
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|| || ||||| || || | |||||||| | || || ||||| |||
Sbjct 4173 AATATTCAAAAGGAATCTACCCTACATTTGGTACTTCGCTTACGTGGGGGC 4123
Score = 82.4 bits (90), Expect = 5e-11
Identities = 152/223 (68%), Gaps = 10/223 (4%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||| ||||| | ||||| ||| |||||| | || || || ||
Sbjct 5718 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCC 5659
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
|| |||||| | || ||| |||||| ||||| ||||| | || |
Sbjct 5658 GA-----TACAATTGAAAACGTAAAAGCAAAAATTCAAGACAAGGAAGGCATCCCACCAG 5604
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||||| ||||| || || || || |||||||| || | || | ||||| || |
Sbjct 5603 ACCAACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGCCGTACATTGTCTGACT 5544
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007
|||| |||||||| || ||| | |||||||| | |||||
Sbjct 5543 ACAATATCCAAAAGGAATCTACTCTCCATTTGGTGCTTCGTTT 5501
Score = 82.4 bits (90), Expect = 5e-11
Identities = 152/223 (68%), Gaps = 10/223 (4%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||||||||| | ||||| ||| |||||| | || || || ||
Sbjct 5982 ATGCAAATTTTTGTGAAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCC 5923
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
|| |||||| | || ||| |||||| ||||| ||||| | || |
Sbjct 5922 GA-----TACAATTGAAAACGTAAAAGCAAAAATTCAAGACAAGGAAGGCATCCCACCAG 5868
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||||| ||||| || || || || |||||||| || | || | ||||| || |
Sbjct 5867 ACCAACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACATTGTCTGACT 5808
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007
| || |||||||| || ||| | |||||||| | |||||
Sbjct 5807 ATAATATCCAAAAGGAATCTACTCTCCATTTGGTGCTTCGTTT 5765
>seq22504
Length=90246
Score = 100 bits (110), Expect = 2e-16
Identities = 163/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845
|| |||||||||||| |||||||| ||||| |||||| || || | || || |||
Sbjct 25528 TACAATGCAAATTTTCGTGAAAACACTTACAGGGAAAACAATAACCCTCGAGGTTGAACC 25587
Query 27846 CACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
||| ||||| | ||| || || ||||| ||||| |||||| | ||
Sbjct 25588 TTCCGATACGATCGAAAAT--GTAAAGGCTAAAATTCAAGACAAGGAAGGTATCCCACCC 25645
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| |||||||| | || || || || ||||| ||||| |||| || | | || |||
Sbjct 25646 GATCAGCAACGTCTTATATTCGCTGGTAAACAGTTGGAAGACGGTCGTACTCTATCGGAT 25705
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || ||||| || || ||||||||| ||||| ||||||||| | || ||
Sbjct 25706 TATAATATCCAGAAGGAATCCACTTTGCACTTGGTGTTGCGTTTGAGGGGTGG 25758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355747879587435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |