Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq9911 123 2e-23 seq22504 100 2e-16 >seq9911 Length=12084 Score = 123 bits (136), Expect = 2e-23 Identities = 170/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||||||||||| ||| |||||| | || || ||| || Sbjct 4579 AATGCAAATCTTTGTAAAAACTCTTACTGGAAAAACAATTACATTAGAAGTGGAAC-CAT 4521 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 || || || | || || ||| |||||| |||||||||||| | || || Sbjct 4520 CGGACACCATTGAAAAC--GTTAAAGCAAAAATCCAAGACAAAGAAGGTATACCTCCAGA 4463 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATT 27964 |||||||| || ||||||||||| ||||||||||| || | |||| |||| || |||| Sbjct 4462 CCAGCAACGTTTGATTTTTGCCGGGAAACAATTGGAGGATGGCCGCACGCTT-TCAGATT 4404 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||||||||| || |||| || || ||||| ||| | || || Sbjct 4403 ATAATATCCAAAAAGAATCTACACTGCACTTAGTCTTGCGATTGAGAGGAGG 4352 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || |||||||||||| ||| ||| | || || ||| | Sbjct 4350 ATGCAAATATTTGTTAAGACCCTTACTGGGAAAACTATCACATTGGAAGTAGAACCTTCA 4291 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | || || | || | |||| | || || ||||||||| |||| || Sbjct 4290 GATACAATTGAAAA-CGTTAAAGCTAAAATTCAG--GATAAAGAAGGTATTCCTCCAGAT 4234 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || || ||||| |||||||||||||| || | || | | || |||||| Sbjct 4233 CAGCAGCGTTTGATCTTTGCAGGAAAACAATTGGAAGATGGGCGAACTCTTTCAGATTAC 4174 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || || ||||| || || | |||||||| | || || ||||| ||| Sbjct 4173 AATATTCAAAAGGAATCTACCCTACATTTGGTACTTCGCTTACGTGGGGGC 4123 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/223 (68%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | ||||| ||| |||||| | || || || || Sbjct 5718 ATGCAAATTTTTGTAAAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCC 5659 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||| | || ||| |||||| ||||| ||||| | || | Sbjct 5658 GA-----TACAATTGAAAACGTAAAAGCAAAAATTCAAGACAAGGAAGGCATCCCACCAG 5604 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| ||||| || || || || |||||||| || | || | ||||| || | Sbjct 5603 ACCAACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGCCGTACATTGTCTGACT 5544 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 |||| |||||||| || ||| | |||||||| | ||||| Sbjct 5543 ACAATATCCAAAAGGAATCTACTCTCCATTTGGTGCTTCGTTT 5501 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/223 (68%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||||||||| | ||||| ||| |||||| | || || || || Sbjct 5982 ATGCAAATTTTTGTGAAAACCTTGACTGGAAAAACCATTACATTGGAAGTTGAGCCATCC 5923 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||| | || ||| |||||| ||||| ||||| | || | Sbjct 5922 GA-----TACAATTGAAAACGTAAAAGCAAAAATTCAAGACAAGGAAGGCATCCCACCAG 5868 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| ||||| || || || || |||||||| || | || | ||||| || | Sbjct 5867 ACCAACAACGTTTAATCTTCGCTGGCAAGCAATTGGAAGATGGCCGAACATTGTCTGACT 5808 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 | || |||||||| || ||| | |||||||| | ||||| Sbjct 5807 ATAATATCCAAAAGGAATCTACTCTCCATTTGGTGCTTCGTTT 5765 >seq22504 Length=90246 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 || |||||||||||| |||||||| ||||| |||||| || || | || || ||| Sbjct 25528 TACAATGCAAATTTTCGTGAAAACACTTACAGGGAAAACAATAACCCTCGAGGTTGAACC 25587 Query 27846 CACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||| ||||| | ||| || || ||||| ||||| |||||| | || Sbjct 25588 TTCCGATACGATCGAAAAT--GTAAAGGCTAAAATTCAAGACAAGGAAGGTATCCCACCC 25645 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| | || || || || ||||| ||||| |||| || | | || ||| Sbjct 25646 GATCAGCAACGTCTTATATTCGCTGGTAAACAGTTGGAAGACGGTCGTACTCTATCGGAT 25705 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||| || || ||||||||| ||||| ||||||||| | || || Sbjct 25706 TATAATATCCAGAAGGAATCCACTTTGCACTTGGTGTTGCGTTTGAGGGGTGG 25758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355747879587435