Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq9911 95.1 1e-14 seq22504 82.4 7e-11 >seq9911 Length=12084 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| || | |||||| | ||||||||||| || || ||||| ||||| ||||| | Sbjct 4123 GCCCCCACGTAAGCGAAGTACCAAATGTAGGGTAGATTCCTTTTGAATATTGTAATCTGA 4182 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 ||| ||||| | || || | ||||| || ||||| || | ||||||||| || | || Sbjct 4183 AAGAGTTCGCCCATCTTCCAATTGTTTTCCTGCAAAGATCAAACGCTGCTGATCTGGAGG 4242 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCCA 39235 | | ||||| ||| ||| ||| | || | || | | | ||||| | || | Sbjct 4243 AATACCTTCTTTATCC-TGAATTTTAGCTTTAACGTTTTCAATTGTATCTGAAGGTTCTA 4301 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | |||| |||||| |||| || || || || |||||||| |||||||| Sbjct 4302 CTTCCAATGTGATAGTTTTCCCAGTAAGGGTCTTAACAAATATTTGCAT 4350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || |||||||| || || || || || || || || |||||||| || Sbjct 4339 AAATATTTGCATACCTCCTCTCAATCGCAAGACTAAGTGCAGTGTAGATTCTTTTTGGAT 4398 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||||||||| | ||| || || | || || | ||||| || ||||| || | ||| || Sbjct 4399 ATTATAATCTGAAAGCGTGCGGCCATCCTCCAATTGTTTCCCGGCAAAAATCAAACGTTG 4458 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTAT 39223 |||||| | || | | |||||||| |||||| || || | || | | | || | Sbjct 4459 CTGGTCTGGAGGTATACCTTCTTTGTCTTGGATTTT-TGCTTTAACGTTTTCAATGGTGT 4517 Query 39224 CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 | | ||||| || | || || ||||||| || || ||||| ||||||||||||| Sbjct 4518 CCGATGGTTCCACTTCTAATGTAATTGTTTTTCCAGTAAGAGTTTTTACAAAGATTTGCA 4577 Query 39284 T 39284 | Sbjct 4578 T 4578 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| | || ||||||||||| ||| ||||| || || |||||||| | Sbjct 4580 CCTCCTCTTAATCTCAATACCAAATGTAGAGTGGATTCTTTCTGAATGTTATAATCAGAT 4639 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || || | || || | |||||| || ||||| || | |||||| || || | || Sbjct 4640 AAAGTACGACCATCTTCCAACTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGAGGT 4699 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | |||||||| ||| || |||| || | | ||||| | ||||| Sbjct 4700 ATTCCTTCTTTGTCTTGGATCTTAGCTTTGGCATTCTCGATAGTATCAGAAGGTTCCACT 4759 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || | |||||||| || ||||| ||||| |||||||| Sbjct 4760 TCCAATGTAATGGTCTTTCCCGTAAGAGTTTTCACAAAAATTTGCAT 4806 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||||| || | |||||||||||| || ||| |||||| | Sbjct 5969 ACAAAAATTTG--CATACCTCCTCTCAATCTTAACACCAAATGAAGTGTGGACTCTTTCT 6026 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| ||||| | || || || | || || | || ||||| ||||| || | | Sbjct 6027 GAATATTGTAATCAGATAGAGTGCGACCATCTTCCAATTGCTTGCCGGCAAAGATCAATC 6086 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 |||| || || | ||| | | ||||||||| ||| || ||| | || | | | Sbjct 6087 GCTGTTGATCTGGGGGAATACCTTCTTTGTCCTGGATCTTAGCTTTTACATTCTCGATGG 6146 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || | ||||| |||| || || |||| || || | || || |||||||| | Sbjct 6147 TGTCTGAAGGTTCCACTTCCAATGTAATTGTTTTACCAGTTAAAGTCTTCACAAAGATCT 6206 Query 39281 GCAT 39284 |||| Sbjct 6207 GCAT 6210 >seq22504 Length=90246 Score = 82.4 bits (90), Expect = 7e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || || || ||||| |||| ||| ||||| || ||||||||||| | Sbjct 21213 CCGCCTCTCAAACGCAATACCAAGTGTAAGGTGGATTCTTTCTGAATATTATAATCCGAT 21154 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || |||| || | |||||| || || ||||||||||| ||||| || |||||| Sbjct 21153 AGAGTACGACCGTCTTCCAACTGTTTACCAGCGAATATAAGACGTTGCTGATCGGGTGGG 21094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429407367527765