Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctes_20borbonicus_20[genbank_20GCA_5F001443705.1_202015-11-13] 26,405 sequences; 423,765,647 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq9911 161 2e-34 seq22504 154 4e-32 >seq9911 Length=12084 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || |||||||| || || | || |||||| || ||| Sbjct 4575 CAAATCTTTGTAAAAACTCTTACTGGAAAAACAATTACATTAGAAGTGGAACCATCGGAC 4516 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| ||| || || ||||||||||| || ||||| ||||||||| Sbjct 4515 ACCATTGAAAACGTTAAAGCAAAAATCCAAGACAAAGAAGGTATACCTCCAGACCAGCAA 4456 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| | || ||||| | || ||| | |||||||| || Sbjct 4455 CGTTTGATTTTTGCCGGGAAACAATTGGAGGATGGCCGCACGCTTTCAGATTATAATATC 4396 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| |||||||| | || ||| || | ||| Sbjct 4395 CAAAAAGAATCTACACTGCACTTAGTCTTGCGATTGAGA 4357 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||||| || ||||| || || || | || |||||| || || Sbjct 4803 CAAATTTTTGTGAAAACTCTTACGGGAAAGACCATTACATTGGAAGTGGAACCTTCTGAT 4744 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| | |||| ||||| || |||||||||||||| ||||| || || || Sbjct 4743 ACTATCGAGAATGCCAAAGCTAAGATCCAAGACAAAGAAGGAATACCTCCAGATCAACAG 4684 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||| | |||||||| | ||| | | ||||||||| | Sbjct 4683 CGTTTAATTTTTGCTGGTAAACAGTTGGAAGATGGTCGTACTTTATCTGATTATAACATT 4624 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || || ||| | || |||||| | ||| Sbjct 4623 CAGAAAGAATCCACTCTACATTTGGTATTGAGATTAAGA 4585 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||| | || || ||||| || || | || |||||| |||||| Sbjct 6207 CAGATCTTTGTGAAGACTTTAACTGGTAAAACAATTACATTGGAAGTGGAACCTTCAGAC 6148 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||||| |||||||||||||| || || || || || || Sbjct 6147 ACCATCGAGAATGTAAAAGCTAAGATCCAGGACAAAGAAGGTATTCCCCCAGATCAACAG 6088 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| ||||| || || | |||||||| | ||||| | ||||| || | Sbjct 6087 CGATTGATCTTTGCCGGCAAGCAATTGGAAGATGGTCGCACTCTATCTGATTACAATATT 6028 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||| || ||||| ||| | || || ||| | ||| Sbjct 6027 CAGAAAGAGTCCACACTTCATTTGGTGTTAAGATTGAGA 5989 Score = 123 bits (136), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA--AGCTCAG 177981 || ||||| || |||||| | || || || || || || || || |||||| |||| | Sbjct 5031 CAGATTTTTGTTAAAACTTTAACTGGTAAGACTATTACACTTGAAGTGGAACCAGCT--G 4974 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| || || || ||| ||||||||| ||||| |||||||||||||| || || | Sbjct 4973 ATACCATAGAAAATGTGAAAGCAAAGATTCAAGACAAGGAAGGAATCCCTCCCGATCAAC 4914 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | || || || || || || | |||||||| | ||||| | ||||| || Sbjct 4913 AACGTTTGATATTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTATCAGATTACAATA 4854 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 | ||||| |||||||| || || || || || Sbjct 4853 TTCAAAAGGAATCAACTCTTCACCTGGTATT 4823 >seq22504 Length=90246 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || ||||| ||||| || ||||||||||| ||| || || Sbjct 25535 CAAATTTTCGTGAAAACACTTACAGGGAAAACAATAACCCTCGAGGTTGAACCTTCCGAT 25594 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || || ||||| ||||| ||||| ||||| || || |||||| Sbjct 25595 ACGATCGAAAATGTAAAGGCTAAAATTCAAGACAAGGAAGGTATCCCACCCGATCAGCAA 25654 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || |||||| | ||||| || | ||||| | |||||||| || Sbjct 25655 CGTCTTATATTCGCTGGTAAACAGTTGGAAGACGGTCGTACTCTATCGGATTATAATATC 25714 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || |||| |||| Sbjct 25715 CAGAAGGAATCCACTTTGCA-CTTG 25738 Score = 125 bits (138), Expect = 2e-23 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 177944 CACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACA 178003 |||||| ||||| || ||||||||||| ||| || || || ||||| || || || Sbjct 21010 CACAGGGAAAACAATAACCCTCGAGGTTGAACCTTCCGATACGATCGAAAATGTAAAGGC 21069 Query 178004 AAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 || ||||| ||||| ||||| ||||| || || |||||||| ||||| ||||| || || Sbjct 21070 TAAAATTCAAGACAAGGAAGGTATCCCACCCGATCAGCAACGTCTTATATTCGCTGGTAA 21129 Query 178064 ACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117 |||| | ||||| || | ||||| | |||||||| | || |||||||| || Sbjct 21130 ACAGTTGGAAGACGGTCGTACTCTATCGGATTATAATATTCAGAAAGAATCCAC 21183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203323960807570