Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq86 150 2e-31 >seq86 Length=611229 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 53123 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 53182 ||| |||| | ||||| ||||||| |||||||||||||| ||||| ||||| |||| | Sbjct 223840 AAATCTCTCAACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGAG 223899 Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242 |||||||| ||||| ||||| | || ||||| ||||| |||||||| || || || Sbjct 223900 TAAATATTTGATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGAA 223959 Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 53302 ||||| ||||||||||||| | | | ||| | || |||| | |||||||| ||| Sbjct 223960 GCAGTTGGCATAGGTGCCATAAGAAGAGAATTACGAACGCCGTGTTGACTGATTTTTTCT 224019 Query 53303 TTTAGAGGTTCCCAATTCCAAAGATC 53328 |||| | | |||||| ||| ||||| Sbjct 224020 TTTAATGCTGCCCAATCCCAGAGATC 224045 Score = 127 bits (140), Expect = 2e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 54436 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT 54495 |||||| || |||||||| || || || |||||||||| |||| ||| || || || || Sbjct 234750 AAATAACGTTGGAGAAGCATGGGTGAAATATTTTTCAGAGAGTAAATTATATGTTTCAAT 234809 Query 54496 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 54555 ||||||||||||||| ||| ||||| || | || ||||| ||||| || ||||| Sbjct 234810 AGCTGAGTCTATATCTTCGCCATGGATTCCAACGGATACTCGCATCAACATATGTTGAGG 234869 Query 54556 TCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACC 54615 |||||| || | || || ||||||| || || ||| |||||||||| | |||| | Sbjct 234870 TCTTTCGACAACTTTACCATTGATTTTCATTAAATAAGATCTTTCCAAAGTCTAAAAAAC 234929 Query 54616 AAA 54618 ||| Sbjct 234930 AAA 234932 Score = 111 bits (122), Expect = 2e-19 Identities = 169/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 |||| ||||||| | | || | | ||||| ||||| ||||| || | |||||| Sbjct 232728 TTCTTCTTCGTATTTTCTGTAGAGTGCATCAAATTCGTCACCCCAGCAATCGCTCAATCC 232787 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAA 54041 |||||| | |||||||||||| ||| ||| || | ||| |||||| |||||| Sbjct 232788 TGGACATCTGTTCGGACACATCAAACTCCAAGTTCCATC-TGATTCTACTCGTCTCATAA 232846 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 | ||| || ||||||||||| ||||| ||||| | |||| || || ||||| | Sbjct 232847 ATTCATCGGGTATCCAAAGAGCATAAAATAAATCTCGAGCTCTAAACTCTTCTTTTCCCG 232906 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 |||||||||| | ||| | || | | |||||| |||||| |||||||| || || Sbjct 232907 TATTCTTTTTTAAATCTAAAAATTCAAAAATATCTCCATGCCATGGTTCCAAATAAAT 232964 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 53364 TACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 53423 |||| |||||| | |||||| |||| ||| ||| || || || || ||||| | || Sbjct 230091 TACCTTTACTGACAGGTGATCCTTCATAAGTACTGTAGGGACCATCTTTTTCAGCAATTT 230150 Query 53424 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 53477 |||||||||| ||||| || || ||||| || |||||||| || | ||||||| Sbjct 230151 CACAACTCGCTTCTAAAGCTCCATAATAGATTGTTTCGAATATTTGTTTATTTA 230204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593550274210800