Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq86 150 2e-31
>seq86
Length=611229
Score = 150 bits (166), Expect = 2e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 53123 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 53182
||| |||| | ||||| ||||||| |||||||||||||| ||||| ||||| |||| |
Sbjct 223840 AAATCTCTCAACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGAG 223899
Query 53183 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 53242
|||||||| ||||| ||||| | || ||||| ||||| |||||||| || || ||
Sbjct 223900 TAAATATTTGATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGAA 223959
Query 53243 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 53302
||||| ||||||||||||| | | | ||| | || |||| | |||||||| |||
Sbjct 223960 GCAGTTGGCATAGGTGCCATAAGAAGAGAATTACGAACGCCGTGTTGACTGATTTTTTCT 224019
Query 53303 TTTAGAGGTTCCCAATTCCAAAGATC 53328
|||| | | |||||| ||| |||||
Sbjct 224020 TTTAATGCTGCCCAATCCCAGAGATC 224045
Score = 127 bits (140), Expect = 2e-24
Identities = 138/183 (75%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 54436 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGAT 54495
|||||| || |||||||| || || || |||||||||| |||| ||| || || || ||
Sbjct 234750 AAATAACGTTGGAGAAGCATGGGTGAAATATTTTTCAGAGAGTAAATTATATGTTTCAAT 234809
Query 54496 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 54555
||||||||||||||| ||| ||||| || | || ||||| ||||| || |||||
Sbjct 234810 AGCTGAGTCTATATCTTCGCCATGGATTCCAACGGATACTCGCATCAACATATGTTGAGG 234869
Query 54556 TCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACC 54615
|||||| || | || || ||||||| || || ||| |||||||||| | |||| |
Sbjct 234870 TCTTTCGACAACTTTACCATTGATTTTCATTAAATAAGATCTTTCCAAAGTCTAAAAAAC 234929
Query 54616 AAA 54618
|||
Sbjct 234930 AAA 234932
Score = 111 bits (122), Expect = 2e-19
Identities = 169/238 (71%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982
|||| ||||||| | | || | | ||||| ||||| ||||| || | ||||||
Sbjct 232728 TTCTTCTTCGTATTTTCTGTAGAGTGCATCAAATTCGTCACCCCAGCAATCGCTCAATCC 232787
Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAA 54041
|||||| | |||||||||||| ||| ||| || | ||| |||||| ||||||
Sbjct 232788 TGGACATCTGTTCGGACACATCAAACTCCAAGTTCCATC-TGATTCTACTCGTCTCATAA 232846
Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101
| ||| || ||||||||||| ||||| ||||| | |||| || || ||||| |
Sbjct 232847 ATTCATCGGGTATCCAAAGAGCATAAAATAAATCTCGAGCTCTAAACTCTTCTTTTCCCG 232906
Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159
|||||||||| | ||| | || | | |||||| |||||| |||||||| || ||
Sbjct 232907 TATTCTTTTTTAAATCTAAAAATTCAAAAATATCTCCATGCCATGGTTCCAAATAAAT 232964
Score = 84.2 bits (92), Expect = 3e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 53364 TACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTT 53423
|||| |||||| | |||||| |||| ||| ||| || || || || ||||| | ||
Sbjct 230091 TACCTTTACTGACAGGTGATCCTTCATAAGTACTGTAGGGACCATCTTTTTCAGCAATTT 230150
Query 53424 CACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTA 53477
|||||||||| ||||| || || ||||| || |||||||| || | |||||||
Sbjct 230151 CACAACTCGCTTCTAAAGCTCCATAATAGATTGTTTCGAATATTTGTTTATTTA 230204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593550274210800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |