Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27]
23,085 sequences; 701,763,251 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1351 233 3e-56
seq259 127 3e-24
seq2617 98.7 1e-15
seq207 93.3 6e-14
seq93 87.8 3e-12
>seq1351
Length=133559
Score = 233 bits (258), Expect = 3e-56
Identities = 258/340 (76%), Gaps = 9/340 (3%)
Strand=Plus/Minus
Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508
|||||||||||||||||||| ||| ||||||||||| ||||||||| |||||||||||
Sbjct 104562 ATGTGCAATCATATAAGTCAGTAATGAATAACTAGCAATATTAAATGGCACACCTAAACC 104503
Query 205509 CATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAA 205568
||||||||| ||||||||||| | |||||| | | |||||| |||| ||||| ||
Sbjct 104502 CATATCAGCAGATCTTTGATATAATTGACACGATA---ATTTATCATTAGCTACATAGAA 104446
Query 205569 TTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGC 205628
|| | ||||||||||||||||| | |||| ||| | ||| ||||||||||| ||
Sbjct 104445 CTGAGCTAAACAATGACAAGGTGGAAGTGCCATTTTTGGTAGATCGATAGGATTCCAAGC 104386
Query 205629 TGTTAATATTATATTTCTA-GAT--TCAGGtttattttttattttatttatAATATGTGT 205685
| ||||| ||| | ||| | || || ||||| ||| | || || |||| |
Sbjct 104385 ---ACACATTATGATTCGACGATCATTTGGATTGTTTTTAATTGTGTTGATGATATCTTG 104329
Query 205686 TAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAA 205745
| |||||| | ||||| | || |||| ||| ||| || |||||| ||| || |
Sbjct 104328 AAGTTGATCTATTCCTTTACCAGTGTAATCAGTAAACATGTCTTTATATTCAGCTCCGTA 104269
Query 205746 ATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785
||||||||||||||||||||| || |||||||| ||||||
Sbjct 104268 ATGACGCCATTGAAAACCATATACGGGACCTAAGTCACCT 104229
>seq259
Length=588930
Score = 127 bits (140), Expect = 3e-24
Identities = 142/190 (75%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || | ||||| ||||| || || | ||| |||| | |
Sbjct 399338 ATGCAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTGAGCCTAGC 399397
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || ||| ||| | || |||||||||||||||||||| || ||||||||||||
Sbjct 399398 GACACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGATCAA 399457
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||||| | || |||||||||||||||||||| ||| | |||| | |||||| ||
Sbjct 399458 CAAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTACAAC 399517
Query 124719 ATTCAAAAAG 124728
||||||||||
Sbjct 399518 ATTCAAAAAG 399527
>seq2617
Length=42959
Score = 98.7 bits (108), Expect = 1e-15
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927
|| ||| ||||| ||||||| | ||||| || ||||||||||||| ||||
Sbjct 24255 CCCACAAATCCACTTGGATCTCTCCCATCCATTGAATATTTATCATTCAAATATATAGCT 24196
Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987
| ||||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct 24195 GTTGCCAGGGCTTCTTCTGGACTACTTGTCCATTCTAATATTTTCTTTGCCCAATACATT 24136
Query 202988 CTTAAATATCCATGCATTTT 203007
||||| | |||||||| ||
Sbjct 24135 CTTAAGAAGCCATGCATCTT 24116
Score = 93.3 bits (102), Expect = 6e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 203112 TATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTT 203171
|||| ||||| ||||||||| ||||||||| || ||| |||| | || || || ||||
Sbjct 23286 TATGATCATTGAGTGTTTTTCTTGCCCAATCATAAGCTCCATCAACTTTGTCATATTTTT 23227
Query 203172 CATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAA 203231
||| |||||||||||||||| || ||| | | || || ||||| ||||| |||
Sbjct 23226 TGTTAAAATAACAAAAATTATCTGCCAGCTCTCTCCTAACGATTGCTTCCTCACAGAAAC 23167
Query 203232 CTTCTACCGATTTAGGATATAATTTTTTATA 203262
||| || | ||| |||| | | ||||||
Sbjct 23166 TTTCCACAGCTTTGGGATGTTTTGATTTATA 23136
Score = 91.5 bits (100), Expect = 2e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 203521 ATAAGTATGTTTAATAATAGGTATAAATTCAGTTAAATATTCTGATAATTTATAATTTAT 203580
||||| |||||| || | ||| || || || || |||| | |||||||| || ||
Sbjct 19716 ATAAGGATGTTTGATGACCGGTGGGAACTCGGTCAAGAATTCAGGTAATTTATTGTTGAT 19657
Query 203581 TTTATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTAC 203640
|||||||| ||| ||| |||| |||||||||||||| | ||| |||||||| || ||
Sbjct 19656 TTTATTTCGAATTGTTCTTGCGCCATATTCTAATTTATCAGAAGCTATCCAACAGGGGAC 19597
Query 203641 AATATTATGTGAATC 203655
||||| || | |||
Sbjct 19596 GATATTGTGGGCATC 19582
>seq207
Length=511460
Score = 93.3 bits (102), Expect = 6e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699
|||||| ||||||||||| || | ||||| || || |||||||||||||| |||
Sbjct 362003 AGGTATCCCACCTGATCAGCAGCGACTTATCTTCGCCGGAAAACAATTAGAAGATGACAA 361944
Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759
||| || || ||||| |||||||||||||| || | |||||||| || | |||||
Sbjct 361943 AACCCTATCTGACTATAACATTCAAAAAGAATCCACACTCCATTTGGTATTGAGATTACG 361884
Query 124760 AGGTGG 124765
|||||
Sbjct 361883 TGGTGG 361878
>seq93
Length=855823
Score = 87.8 bits (96), Expect = 3e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| | || |||||||| || || | || | ||| |
Sbjct 276599 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAGAACCCTCA 276658
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || || | ||| ||||| ||||| || || || || ||||| || |||
Sbjct 276659 GACACCATCGAGAACGTCAAAGCTAAAATCCAAGACAAGGAGGGAATCCCACCCGACCAA 276718
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | || ||||| || ||||||||||| ||||| | || || || || || ||
Sbjct 276719 CAACGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTATCCGACTACAAC 276778
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754
|| ||||| ||||| || | |||||||| || |||
Sbjct 276779 ATCCAAAAGGAATCCACCCTCCATTTGGTGTTGCGT 276814
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755238003728000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |