Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1351 233 3e-56 seq259 127 3e-24 seq2617 98.7 1e-15 seq207 93.3 6e-14 seq93 87.8 3e-12 >seq1351 Length=133559 Score = 233 bits (258), Expect = 3e-56 Identities = 258/340 (76%), Gaps = 9/340 (3%) Strand=Plus/Minus Query 205449 ATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACC 205508 |||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||| Sbjct 104562 ATGTGCAATCATATAAGTCAGTAATGAATAACTAGCAATATTAAATGGCACACCTAAACC 104503 Query 205509 CATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAA 205568 ||||||||| ||||||||||| | |||||| | | |||||| |||| ||||| || Sbjct 104502 CATATCAGCAGATCTTTGATATAATTGACACGATA---ATTTATCATTAGCTACATAGAA 104446 Query 205569 TTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGC 205628 || | ||||||||||||||||| | |||| ||| | ||| ||||||||||| || Sbjct 104445 CTGAGCTAAACAATGACAAGGTGGAAGTGCCATTTTTGGTAGATCGATAGGATTCCAAGC 104386 Query 205629 TGTTAATATTATATTTCTA-GAT--TCAGGtttattttttattttatttatAATATGTGT 205685 | ||||| ||| | ||| | || || ||||| ||| | || || |||| | Sbjct 104385 ---ACACATTATGATTCGACGATCATTTGGATTGTTTTTAATTGTGTTGATGATATCTTG 104329 Query 205686 TAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAA 205745 | |||||| | ||||| | || |||| ||| ||| || |||||| ||| || | Sbjct 104328 AAGTTGATCTATTCCTTTACCAGTGTAATCAGTAAACATGTCTTTATATTCAGCTCCGTA 104269 Query 205746 ATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCT 205785 ||||||||||||||||||||| || |||||||| |||||| Sbjct 104268 ATGACGCCATTGAAAACCATATACGGGACCTAAGTCACCT 104229 >seq259 Length=588930 Score = 127 bits (140), Expect = 3e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || | ||||| ||||| || || | ||| |||| | | Sbjct 399338 ATGCAGATCTTTGTCAAAACTTTGACAGGAAAAACCATCACCCTTGAGGTTGAGCCTAGC 399397 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||||||||||||||||| || |||||||||||| Sbjct 399398 GACACTATTGAAAATGTCAAGGCTAAAATTCAAGATAAAGAAGGAATTCCACCTGATCAA 399457 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || |||||||||||||||||||| ||| | |||| | |||||| || Sbjct 399458 CAAAGATTGATCTTTGCAGGAAAACAATTAGAAGATGGAAGAACTCTTTCAGATTACAAC 399517 Query 124719 ATTCAAAAAG 124728 |||||||||| Sbjct 399518 ATTCAAAAAG 399527 >seq2617 Length=42959 Score = 98.7 bits (108), Expect = 1e-15 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 || ||| ||||| ||||||| | ||||| || ||||||||||||| |||| Sbjct 24255 CCCACAAATCCACTTGGATCTCTCCCATCCATTGAATATTTATCATTCAAATATATAGCT 24196 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 | ||||||||||| ||||||||||||||||||| || |||||||||||| Sbjct 24195 GTTGCCAGGGCTTCTTCTGGACTACTTGTCCATTCTAATATTTTCTTTGCCCAATACATT 24136 Query 202988 CTTAAATATCCATGCATTTT 203007 ||||| | |||||||| || Sbjct 24135 CTTAAGAAGCCATGCATCTT 24116 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 203112 TATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTT 203171 |||| ||||| ||||||||| ||||||||| || ||| |||| | || || || |||| Sbjct 23286 TATGATCATTGAGTGTTTTTCTTGCCCAATCATAAGCTCCATCAACTTTGTCATATTTTT 23227 Query 203172 CATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAA 203231 ||| |||||||||||||||| || ||| | | || || ||||| ||||| ||| Sbjct 23226 TGTTAAAATAACAAAAATTATCTGCCAGCTCTCTCCTAACGATTGCTTCCTCACAGAAAC 23167 Query 203232 CTTCTACCGATTTAGGATATAATTTTTTATA 203262 ||| || | ||| |||| | | |||||| Sbjct 23166 TTTCCACAGCTTTGGGATGTTTTGATTTATA 23136 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 203521 ATAAGTATGTTTAATAATAGGTATAAATTCAGTTAAATATTCTGATAATTTATAATTTAT 203580 ||||| |||||| || | ||| || || || || |||| | |||||||| || || Sbjct 19716 ATAAGGATGTTTGATGACCGGTGGGAACTCGGTCAAGAATTCAGGTAATTTATTGTTGAT 19657 Query 203581 TTTATTTCTAATGGTTTTTGCAGAATATTCTAATTTATTACTAGCAATCCAACATGGTAC 203640 |||||||| ||| ||| |||| |||||||||||||| | ||| |||||||| || || Sbjct 19656 TTTATTTCGAATTGTTCTTGCGCCATATTCTAATTTATCAGAAGCTATCCAACAGGGGAC 19597 Query 203641 AATATTATGTGAATC 203655 ||||| || | ||| Sbjct 19596 GATATTGTGGGCATC 19582 >seq207 Length=511460 Score = 93.3 bits (102), Expect = 6e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| ||||||||||| || | ||||| || || |||||||||||||| ||| Sbjct 362003 AGGTATCCCACCTGATCAGCAGCGACTTATCTTCGCCGGAAAACAATTAGAAGATGACAA 361944 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 ||| || || ||||| |||||||||||||| || | |||||||| || | ||||| Sbjct 361943 AACCCTATCTGACTATAACATTCAAAAAGAATCCACACTCCATTTGGTATTGAGATTACG 361884 Query 124760 AGGTGG 124765 ||||| Sbjct 361883 TGGTGG 361878 >seq93 Length=855823 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| | || |||||||| || || | || | ||| | Sbjct 276599 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACAATCACCCTTGAAGTAGAACCCTCA 276658 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | ||| ||||| ||||| || || || || ||||| || ||| Sbjct 276659 GACACCATCGAGAACGTCAAAGCTAAAATCCAAGACAAGGAGGGAATCCCACCCGACCAA 276718 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| || ||||||||||| ||||| | || || || || || || Sbjct 276719 CAACGTCTGATTTTCGCCGGAAAACAATTGGAGGACGGCCGTACCCTATCCGACTACAAC 276778 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 || ||||| ||||| || | |||||||| || ||| Sbjct 276779 ATCCAAAAGGAATCCACCCTCCATTTGGTGTTGCGT 276814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755238003728000