Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2541 120 3e-22 seq2420 120 3e-22 seq772 120 3e-22 seq45 118 1e-21 seq305 114 1e-20 seq4 114 1e-20 seq93 113 5e-20 seq25 113 5e-20 seq53 107 2e-18 seq8065 91.5 2e-13 seq1110 89.7 6e-13 >seq2541 Length=72813 Score = 120 bits (132), Expect = 3e-22 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 ||| | ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 64413 TTTTTAAAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 64472 Query 60111 ACATACTCACCACTATACTACCGAGGATTGA 60141 ||||| ||||||||||||||||||||||| Sbjct 64473 GGATACTGACCACTATACTACCGAGGATTGA 64503 >seq2420 Length=127154 Score = 120 bits (132), Expect = 3e-22 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 8312 AAAAAATATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 8371 Query 60117 TCACCACTATACTACCGAGGATTGAA 60142 | |||||||||||||||||||||||| Sbjct 8372 TGACCACTATACTACCGAGGATTGAA 8397 >seq772 Length=154466 Score = 120 bits (132), Expect = 3e-22 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 ||| | ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 148472 TTTTTTAAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 148413 Query 60111 ACATACTCACCACTATACTACCGAGGATTGA 60141 ||||| ||||||||||||||||||||||| Sbjct 148412 GGATACTGACCACTATACTACCGAGGATTGA 148382 >seq45 Length=1118719 Score = 118 bits (130), Expect = 1e-21 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 183627 AAAAAAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 183686 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | ||||||||||||||||||||||| Sbjct 183687 TGACCACTATACTACCGAGGATTGA 183711 >seq305 Length=510274 Score = 114 bits (126), Expect = 1e-20 Identities = 81/92 (88%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 380635 GAAAAATT--CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 380578 Query 60116 CTCACCACTATACTACCGAGGATTGAATATAT 60147 || ||||||||||||||||||||| ||||| Sbjct 380577 CTGACCACTATACTACCGAGGATTATGTATAT 380546 >seq4 Length=1754129 Score = 114 bits (126), Expect = 1e-20 Identities = 85/97 (88%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 601195 ATTAAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 601254 Query 60114 TACTCACCACTATACTACCGAGGAT-TGAATA-TATA 60148 |||| |||||||||||||||||||| |||||| |||| Sbjct 601255 TACTGACCACTATACTACCGAGGATATGAATACTATA 601291 >seq93 Length=855823 Score = 113 bits (124), Expect = 5e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| || | ||||||||||||||| | ||| |||||||| || ||||| || | Sbjct 276826 TCCTCCCCTGAGACGCAACACCAAATGGAGGGTGGATTCCTTTTGGATGTTGTAGTCGGA 276767 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || | || || || ||||| || || || || ||||||| || Sbjct 276766 TAGGGTACGGCCGTCCTCCAATTGTTTTCCGGCGAAAATCAGACGTTGTTGGTCGGGTGG 276707 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||||| |||||| ||||| || | | ||||| | ||| || Sbjct 276706 GATTCCCTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCGATGGTGTCTGAGGGTTCTAC 276647 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || | ||||| |||||||| || | ||||| |||||||| ||||| ||| Sbjct 276646 TTCAAGGGTGATTGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATATTT 276595 >seq25 Length=1185957 Score = 113 bits (124), Expect = 5e-20 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 780480 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 780421 Query 60117 TCACCACTATACTACCGAGGATTGA 60141 | ||||||||||||||||||||||| Sbjct 780420 TGACCACTATACTACCGAGGATTGA 780396 >seq53 Length=807806 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 122480 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 122421 Query 60125 ATACTACCGAGGAT 60138 |||||||||||||| Sbjct 122420 ATACTACCGAGGAT 122407 >seq8065 Length=22102 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/228 (70%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | ||||||||||||||| | |||| |||||||| || |||||||| | Sbjct 20204 CCTCCTCCGAGACGCAACACCAAATGAATTGTGGATTCCTTTTGGATGTTGTAATCGGAT 20145 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || ||| | | | || || || ||||| || || || || ||||||| || Sbjct 20144 AGGGTACGGTCGCTAACCAAATGTTTTCCCGCGAAAATCAGACGTTGTTGGTCGGGAGGG 20085 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| |||| | ||| |||| | ||||| | | |||||| | |||||| Sbjct 20084 ATTCCCTCTTTGT-CTTGAATTTTAGCTTTGACATTATCGGTGGTGTCGGAGGGTTCCAC 20026 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||||||| | | | | |||||||||| ||||| Sbjct 20025 TTCAAGGGTGATGGTTTTGTCATTCAATG---TTACAAAGATCTGCAT 19981 >seq1110 Length=140048 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 60079 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 120855 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGA 120913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571652594883800