Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq8572 196 4e-45 seq86 129 5e-25 seq5 120 3e-22 >seq8572 Length=13345 Score = 196 bits (216), Expect = 4e-45 Identities = 328/469 (70%), Gaps = 4/469 (1%) Strand=Plus/Minus Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 |||| || || ||||| |||| || | |||||| || | ||||| ||||||| || Sbjct 8704 GACGAATATTCGACAATCTCGGCGCACAAATTGCTGCATTGAATCGTACCCAAATGTTTC 8645 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 || ||| ||| ||| || | |||||||| || | |||||| ||||| || | Sbjct 8644 TGATTGGATTTGTAATTACAAGCGTCCTTGTAAAGGACGTACGGTCCTCCCGTTTCTATT 8585 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCT-GAGCGTGAACACGTCGCACGTACCTGCC 23238 |||| |||| || |||| ||| | |||| | || | || || ||||| |||| Sbjct 8584 TGCGCATCGACAATGGCTCTCCAGAG-GTCTCGTGCATTTACTTTGCGAACGTAATTGCC 8526 Query 23239 TTCTTCCTCGTACTTTTGGTACAACGCGT-CAAATTCGGCACCGTAACAGTCGGCCAGGC 23297 | ||||||| | | |||| |||| |||||||| ||||| | || | Sbjct 8525 GGCCGCCTCGTATTCTGCGTACTG-GCGTTCAAATTCGTTGCCGTATATGAGATGAAGCC 8467 Query 23298 CGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAA 23357 |||||||| | || |||||||||||||||||| || ||||| ||||| |||||| Sbjct 8466 CGGGCGATCGATGTGGGCACATGAGACTCCACATTTCGTTGTTTTCGACGCGCTTCATAA 8407 Query 23358 AAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGG 23417 | | || ||||| |||||||||||||| ||||| || || | || ||| | Sbjct 8406 ATTCGTTTGGAATCCAGAGAGCGTAGAACAGGTCGCGCGCCCGACTTTGTTCGGCGCCAG 8347 Query 23418 TGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGG 23477 | || ||||| | |||| || ||| || | ||| || |||||||| |||| ||| |||| Sbjct 8346 TATTTTTTTTAAGGTCCAGAACGTCAAAAATGTCGGCGTGCCACGGTTCGATGTACACGG 8287 Query 23478 CAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGT 23526 ||||||||||||||| || || || || || ||||| ||||||||||| Sbjct 8286 CAAACGCGCCCGGTCGTTTGTTTCCTCCTTGGTCGACATAACGGGCCGT 8238 >seq86 Length=611229 Score = 129 bits (142), Expect = 5e-25 Identities = 184/259 (71%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 |||||||| ||||| ||| ||| | || ||||||||| |||| | || ||| || Sbjct 232726 CCTTCTTCTTCGTATTTTCTGTAGAGTGCATCAAATTCGTCACCCCAGCAATCGCTCAAT 232785 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 || || || |||||||||| | |||||| || || ||| || ||||||||| Sbjct 232786 CCTGGACATCTGTTCGGACACATCAAACTCCAAGTTCCATCTGATTCTACTCGTCTCATA 232845 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || ||| |||||||| ||||| || || | || || || | | ||| ||||| || Sbjct 232846 AATTCATCGGGTATCCAAAGAGCATAAAATAAATCTCGAGCTCTAAACTCTTCTTTTCCC 232905 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 || |||||||| ||||| ||||| || || | || ||||||| || || | |||| Sbjct 232906 GTATTCTTTTTTAAATCTAAAAATTCAAAAATATCTCCATGCCATGGTTCCAAATAAATA 232965 Query 23477 GCAAACGCGCCCGGTCTCT 23495 ||||| || || ||||||| Sbjct 232966 GCAAAAGCTCCGGGTCTCT 232984 Score = 118 bits (130), Expect = 9e-22 Identities = 174/243 (72%), Gaps = 9/243 (4%) Strand=Plus/Plus Query 22432 CAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTG 22491 ||||||| | | ||||||| | || || |||||||| || || ||||| || | || Sbjct 223839 CAAATCTCTCAACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGA 223898 Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 |||||| || ||||| | ||||| || |||||||||||||| | || || || || || Sbjct 223899 GTAAATATTTGATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGA 223958 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGA---AATTTT 22608 ||| || ||||| || |||| || || || || | | |||||| |||| | |||| Sbjct 223959 AGCAGTTGGCATAGGTGCCATAAGAAGAGAATTACGAACGCCGTG--TTGACTGATTTTT 224016 Query 22609 ACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTA 22668 || || | | | ||| ||||| ||||| | || || ||||| ||||||||| || Sbjct 224017 TCTTTTAATGCT-GCCCAATCCCAGAGATCTGTTGGGGTAACATT---CCACATATCATA 224072 Query 22669 TTG 22671 ||| Sbjct 224073 TTG 224075 >seq5 Length=1739417 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || ||||| || || | || |||||||| Sbjct 581865 AAGATGCAGATTTTCGTGAAGACCCTCACCGGAAAAACCATTACTTTGGAAGTTGAACCT 581924 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | |||||| || ||| | || ||||| |||||| | || ||||| Sbjct 581925 TCCGACACTATCGAAAATGTAAAAGCCAAGATCCAAGACAAAGAAGGCATTCCACCCGAT 581984 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 || |||||| | || || ||||| |||||||||||||| | | | ||| | || || Sbjct 581985 CAACAGCGTTTGATCTTTGCTGGTAAACAGTTGGAAGA-TGGACGTACTCTTTCAGACTA 582043 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCT 31398 |||||||| ||||| || || || ||||| Sbjct 582044 CAACATTCAGAAAGAGTCCACCCTCCATCT 582073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445637768533200