Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pachypsylla_20venusta_20[genbank_20GCA_5F000695645.1_202014-05-27] 23,085 sequences; 701,763,251 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq86 141 1e-28 >seq86 Length=611229 Score = 141 bits (156), Expect = 1e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 62361 AAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTG 62420 ||| |||| | ||||| | ||||| ||||| |||||||| ||||| ||||| |||| | Sbjct 223840 AAATCTCTCAACAGATGATGATTAACAACTTGAAATTCTCCCGACAAAACTCTTCGAGAG 223899 Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 |||||||| ||||| ||||| | || ||||| ||||| |||||||| || || || Sbjct 223900 TAAATATTTGATGTATATGGTTCAAATGATTCATTGTTTCCTAAAATTTGTGCTGTGGAA 223959 Query 62481 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62540 ||||| ||||||||||||| | | | ||| | || |||| | |||||||| ||| Sbjct 223960 GCAGTTGGCATAGGTGCCATAAGAAGAGAATTACGAACGCCGTGTTGACTGATTTTTTCT 224019 Query 62541 TTTAGATG-TTCCCAATTCCAAAGATC 62566 |||| ||| | |||||| ||| ||||| Sbjct 224020 TTTA-ATGCTGCCCAATCCCAGAGATC 224045 Score = 141 bits (156), Expect = 1e-28 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 63674 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63733 |||||| || |||||||| || || || |||||||||| |||| ||| || || ||||| Sbjct 234750 AAATAACGTTGGAGAAGCATGGGTGAAATATTTTTCAGAGAGTAAATTATATGTTTCAAT 234809 Query 63734 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 ||||||||||||||| ||| ||||| || | || ||||| ||||| || ||||| Sbjct 234810 AGCTGAGTCTATATCTTCGCCATGGATTCCAACGGATACTCGCATCAACATATGTTGAGG 234869 Query 63794 TCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63853 |||||| |||| ||| || ||||||| || || ||| |||||||||| | |||| | Sbjct 234870 TCTTTCGACAACTTTACCATTGATTTTCATTAAATAAGATCTTTCCAAAGTCTAAAAAAC 234929 Query 63854 AAA 63856 ||| Sbjct 234930 AAA 234932 Score = 105 bits (116), Expect = 8e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 || || ||||| ||||| || | ||||| |||||| | |||||||||||| | Sbjct 232756 TCAAATTCGTCACCCCAGCAATCGCTCAATCCTGGACATCTGTTCGGACACATCAAACTC 232815 Query 63249 CACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307 || ||| || | ||| |||||| ||||||| ||| || ||||||||||| ||| Sbjct 232816 CAAGTTCCATC-TGATTCTACTCGTCTCATAAATTCATCGGGTATCCAAAGAGCATAAAA 232874 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367 || ||||| | |||| || || ||||| ||||||||||| | ||| | || | | Sbjct 232875 TAAATCTCGAGCTCTAAACTCTTCTTTTCCCGTATTCTTTTTTAAATCTAAAAATTCAAA 232934 Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 |||||| |||||| |||||||| || || || | | |||| || Sbjct 232935 AATATCTCCATGCCATGGTTCCAAATAAATAGCAAAAGCTCCGGG 232979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629635858258800